Fig. 4
From: Detection and classification of the integrative conjugative elements of Lactococcus lactis
Example of the phylogenetic trees and clade definitions generated for each of the 17 core L. lactis ICE genes. In this example is the phylogenetic tree of the MobT function and the E-values of each clade specific HMM profile on each entry. A clear distribution and distinction of three clades can be discerned. Furthermore, the E-values are listed for the initial search for the ICE conserved features, illustrating that all lactococcal MobT proteins belong to the PF02486 protein family