Table 1 Summary of genome assembly, annotation, and assessments of M. bimucronata
Descriptions | Monoploid genome assembly | Haplotype-resolved chromosomal-level | |
|---|---|---|---|
Haplotype A | Haplotype B | ||
Estimated genome size (Mb) | 660 | / | / |
Assembly size (Mb) | 648.36 | 599.96 | 619.79 |
Percent of estimated genome size (%) | 98.2 | 91 | 93.9 |
Contig N50 (Mb) | 19.04 | 6.57 | 6.88 |
Scaffold N50 (Mb) | 48.41 | 44.4 | 48.5 |
BUSCO completeness of assembly (%) | 98.7 | 97.4 | 98.4 |
Total number of genes | 32,146 | 31,035 | 31,440 |
BUSCO completeness of annotation (%) | 98.4 | 95.8 | 97.4 |
Raw LAI | 11.87 | 11.4 | 11.52 |
LAI | 15.27 | 13.54 | 13.4 |
QV | 43.9 | 44.62 | 44.99 |
K-mer completeness | 86.82 | 84.83 | 86.88 |
Phase blocks and switch error rate | 4.07E-05 | 3.45E-05 | 3.17E-05 |
False duplications | 2.58 | 2.49 | 2.96 |
Number of genes with two alleles | / | 14,685 | |
Number of genes with the same allele | / | 9,929 | |
Number of genes with one allele | / | 1,653 | 2,061 |
Total number of anchored genes | 31,824 | 30,164 | 30,589 |
Unanchored genes or alleles | 322 | 871 | 851 |
Sequence identities (median) | / | 99.40% | |
Sequence identities (average) | / | 99.40% | |