New investigation of encoding secondary metabolites gene by genome mining of a marine bacterium, Pseudoalteromonas viridis BBR56

Table 1 Pairwise comparisons of BBR56 genomes with other bacterial genomes by digital DNA–DNA hybridization analysis

Query	Subject	d₀	C.I. d₀	d₄	C.I. d₄	d₆	C.I. d₆	Different G + C content
BBR56	Marinomonas transparens C1424	12.8	[10.1– 16.0]	49.0	[46.4– 51.6]	13.2	[10.8– 16.0]	5.43
BBR56	Methylophaga frappieri JAM7	12.9	[10.2–16.1]	43.5	[40.9–46.0]	13.3	[10.9–16.1]	1.34
BBR56	Paraferrimonas haliotis AFRC7-2-1	12.9	[10.2–16.2]	42.4	[39.9–45.0]	13.3	[11.0–16.1]	2.1
BBR56	Alteromonas antonina MD_567T	12.9	[10.2–16.2]	36.0	[33.5–38.5]	13.3	[11.0–16.1]	0.4
BBR56	Salinivibrio sonomensis S35T	12.9	[10.2–16.2]	32.8	[30.4–35.3]	13.3	[11.0–16.1]	0.25
BBR56	P. spongiae JCM 12,884	13.2	[10.5–16.5]	24.8	[22.4–27.2]	13.6	[11.2–16.3]	8.45
BBR56	P. profundi CGMCC 115,394	13.8	[11.0–17.1]	24.2	[21.9–26.7]	14.1	[11.7–16.9]	7.79
BBR56	P. caenipelagi JBTF-M23	14.2	[11.4–17.6]	20.5	[18.3–22.9]	14.4	[12.0–17.3]	7.28
BBR56	P. peptidolytica NBRC 101,021	14.3	[11.5–17.7]	20.4	[18.2–22.8]	14.5	[12.1–17.4]	6.82
BBR56	P. phenolica KCTC 12,086	14.4	[11.5–17.8]	21.6	[19.3–24.0]	14.6	[12.2–17.5]	8.68
BBR56	P. piscicida ATCC 15,057	14.6	[11.8–18.0]	19.7	[17.5–22.1]	148	[12.3–17.6]	6.04
BBR56	P. flavipulchra LMG 20,361	14.8	[11.9–18.2]	20.3	[18.1–22.7]	14.9	[12.4–17.8]	6.02
BBR56	P. maricaloris LMG 19,692	14.8	[11.9–18.2]	20.2	[18.0–22.6]	14.9	[12.4–17.8]	6.15
BBR56	P. galathea S4498T	14.9	[12.1–18.4]	21.0	[18.7–23.4]	15.1	[12.6–17.9]	6.27
BBR56	P. luteoviolacea DSM 6061	15.2	[12.3–18.7]	19.5	[17.3–21.9]	15.3	[12.8–18.2]	7.49
BBR56	P. rubra ATCC 29,570	56.9	[53.4–60.4]	25.9	[22.4–27.2]	46.8	[43.8–49.8]	1.47

ISSN: 1471-2164