Table 3 Description of overlapped DEGs between acidic and oxidative stress conditions
From: Prominent transcriptomic changes in Mycobacterium intracellulare under acidic and oxidative stress
Gene ID | Function | Functional categories | Fold change in acidic stress condition | Fold change in oxidative stress condition |
|---|---|---|---|---|
OCU_t00110 | tRNA-Thr | Stable RNAs | 2.16 | 2.49 |
OCU_00590 | hypothetical protein | Unknown | 2.30 | 2.05 |
OCU_00810 | MmpS family protein | Cell wall and cell processes | 5.61 | 2.46 |
OCU_01820 | DNA polymerase IV | Information pathways | 2.23 | 9.38 |
OCU_02460 | hypothetical protein | Insertion seqs and phages | 3.90 | 20.09 |
OCU_03240 | hypothetical protein | Conserved hypotheticals | 4.05 | 5.42 |
OCU_04530 | hypothetical protein | Insertion seqs and phages | 4.49 | 18.01 |
OCU_05560 | hypothetical protein | Conserved hypotheticals | 3.82 | 2.29 |
OCU_06830 | zinc transporter Slc39a7 | Cell wall and cell processes | -2.95 | -2.13 |
OCU_06840 | hypothetical protein | Regulatory proteins | -3.42 | -3.24 |
OCU_08780 | hypothetical protein | Conserved hypotheticals | 4.88 | 14.89 |
OCU_08910 | hypothetical protein | Unknown | 2.19 | 3.65 |
OCU_09680 | hypothetical protein | Unknown | 3.39 | 2.70 |
OCU_09740 | putative regulatory protein, FmdB family protein | Unknown | 3.44 | 2.16 |
OCU_10570 | hypothetical protein | Unknown | 2.40 | 2.63 |
OCU_11420 | glyoxalase family protein | Unknown | 2.73 | 5.75 |
OCU_11450 | hypothetical protein | Unknown | 2.64 | 3.44 |
OCU_18370 | hypothetical protein | Unknown | 5.76 | 6.43 |
OCU_21410 | TetR family transcriptional regulator | Regulatory proteins | 3.22 | 2.94 |
OCU_21470 | fdxC_1 | Intermediary metabolism and respiration | 2.93 | 4.78 |
OCU_21490 | secreted protein | Intermediary metabolism and respiration | 9.86 | 4.60 |
OCU_21500 | nirA_1 | Intermediary metabolism and respiration | 13.48 | 5.64 |
OCU_22710 | hypothetical protein | Unknown | 3.58 | 3.90 |
OCU_26160 | hypothetical protein | Conserved hypotheticals | 2.12 | 6.04 |
OCU_27960 | hypothetical protein | Conserved hypotheticals | 2.34 | 5.24 |
OCU_29330 | hypothetical protein | Conserved hypotheticals | 3.10 | 5.68 |
OCU_29740 | excinuclease ABC subunit B | Information pathways | 3.04 | 2.71 |
OCU_32850 | 13e12 repeat-containing protein | Insertion seqs and phages | 4.06 | 5.55 |
OCU_34460 | LysM domain-containing protein | Unknown | 2.08 | 3.40 |
OCU_36850 | hypothetical protein | Conserved hypotheticals | 3.48 | 4.09 |
OCU_38160 | hypothetical protein | Conserved hypotheticals | 5.63 | 9.95 |
OCU_39980 | hypothetical protein | Information pathways | 4.06 | 5.36 |
OCU_39990 | helicase, UvrD/Rep family protein | Information pathways | 4.19 | 7.55 |
OCU_41250 | DEAD/DEAH box helicase | Information pathways | 2.58 | 3.04 |
OCU_41260 | hypothetical protein | Unknown | 2.27 | 2.38 |
OCU_41760 | hypothetical protein | Insertion seqs and phages | 3.20 | 3.34 |
OCU_41930 | error-prone DNA polymerase | Information pathways | 3.61 | 2.25 |
OCU_42030 | hypothetical protein | Conserved hypotheticals | 3.17 | 22.14 |
OCU_42040 | hypothetical protein | Conserved hypotheticals | 3.92 | 23.63 |
OCU_42300 | chaperonin GroEL | Virulence, detoxification, adaptation | 3.48 | 3.07 |
OCU_42310 | chaperone GroES | Virulence, detoxification, adaptation | 4.00 | 3.23 |
OCU_42900 | hypothetical protein | Unknown | 4.40 | 2.08 |
OCU_43250 | 13e12 repeat-containing protein | Insertion seqs and phages | 3.73 | 10.42 |
OCU_44140 | hypothetical protein | Conserved hypotheticals | 3.94 | 5.64 |
OCU_45770 | chaperonin GroEL | Virulence, detoxification, adaptation | 4.78 | 3.73 |
OCU_46150 | hypothetical protein | Conserved hypotheticals | 3.83 | 8.20 |
OCU_47420 | hypothetical protein | Unknown | 3.70 | 2.44 |
OCU_49070 | hypothetical protein | Unknown | 3.19 | 6.68 |