Table 3 The miRNA-target gene pairs showed reverse expression patterns in the comparison group.

ata-miR2275a-5p

2.333785162

up

TRINITY_DN70714_c2_g1

-1.825905376

down

Transcription factor, Myb superfamily

ath-miR865-5p

-3.179420997

down

TRINITY_DN69793_c0_g3

2.060074385

up

Phosphoribosylaminoimidazole carboxylase (Vigna aconitifolia)

bra-miR172c-5p

-1.872878627

down

TRINITY_DN63657_c1_g1

1.173622602

up

Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein)

cme-miR169q

-1.870743344

down

TRINITY_DN60798_c0_g1

1.303453374

up

Ornithine carbamoyltransferase, chloroplastic (Musa acuminata)

ghr-miR160

3.623852331

up

TRINITY_DN71553_c1_g1

-1.075618235

down

Uncharacterized protein LOC105044151 (Elaeis guineensis)

gma-miR172h-5p

-2.120101667

down

TRINITY_DN70355_c4_g2

3.103030198

up

Calcium-responsive transcription coactivator

gma-miR172h-5p

-2.120101667

down

TRINITY_DN48595_c0_g1

4.614621875

up

GRF1-interacting factor 1 (Phoenix dactylifera)

gma-miR396e

-4.903063906

down

TRINITY_DN74739_c4_g1

1.446181101

up

Uncharacterized protein LOC104613301 (Nelumbo nucifera)

gma-miR396h

-4.52553491

down

TRINITY_DN74739_c4_g1

1.446181101

up

Uncharacterized protein LOC104613301 (Nelumbo nucifera)

hvu-miR6214

1.596413994

up

TRINITY_DN56096_c0_g1

-2.459524584

down

Cytochrome P450 CYP4/CYP19/CYP26 subfamilies

hvu-miR6214

1.596413994

up

TRINITY_DN63516_c1_g3

-2.791599064

down

Hypothetical protein SELMODRAFT_117724 (Selaginella moellendorffii)

hvu-miR6214

1.596413994

up

TRINITY_DN71342_c3_g1

-1.913308793

down

Mavicyanin (Musa acuminata)

hvu-miR6214

1.596413994

up

TRINITY_DN65549_c0_g2

-1.648548563

down

Mavicyanin (Musa acuminata)

hvu-miR6214

1.596413994

up

TRINITY_DN66656_c2_g2

-2.662091299

down

Probable xyloglucan glycosyltransferase 9 (Musa acuminata)

hvu-miR6214

1.596413994

up

TRINITY_DN39053_c0_g1

-3.679784907

down

Proline-rich receptor-like protein kinase PERK13 (Musa acuminata)

hvu-miR6214

1.596413994

up

TRINITY_DN66595_c1_g1

-1.344644483

down

Subtilisin-like protease SBT1.7 (Capsicum annuum)

hvu-miR6214

1.596413994

up

TRINITY_DN65942_c0_g2

-1.329286242

down

Transmembrane protein 45A (Brachypodium distachyon)

hvu-miR6214

1.596413994

up

TRINITY_DN62698_c0_g1

-2.517059999

down

Uncharacterized serine-rich protein C215.13 (Nelumbo nucifera)

hvu-miR6214

1.596413994

up

TRINITY_DN72360_c2_g1

-1.126451034

down

Unnamed protein product [Coffea canephora]

mes-miR477a

-7.063544847

down

TRINITY_DN65677_c0_g3

1.67209331

up

Uncharacterized protein LOC18435300 (Amborella trichopoda)

mes-miR477a

-7.063544847

down

TRINITY_DN65677_c0_g3

1.67209331

up

Uncharacterized protein LOC18435300 [Amborella trichopoda]

mtr-miR2592ap

4.575249424

up

TRINITY_DN69416_c1_g2

-2.46793172

down

Serine carboxypeptidase-like 33 (Phoenix dactylifera)

mtr-miR319a-5p

2.25089675

up

TRINITY_DN59178_c0_g1

-1.23086805

down

1-deoxy-D-xylulose 5-phosphate reductoisomerase LOC101494630 (Cicer arietinum)

mtr-miR5561-3p

-1.81775499

down

TRINITY_DN70248_c0_g1

1.259637401

up

Uncharacterized protein LOC105056005 (Elaeis guineensis)

osa-miR166b-5p

-1.936901594

down

TRINITY_DN73459_c1_g1

2.619379805

up

39S ribosomal protein L47 (Morus notabilis)

osa-miR2931

-2.109704093

down

TRINITY_DN74783_c2_g2

1.733618537

up

Glucose-6-phosphate 1-dehydrogenase 4 (Elaeis guineensis)

osa-miR5795

1.218461156

up

TRINITY_DN61930_c1_g1

-1.302771326

down

Soflavone reductase homolog [Nicotiana sylvestris]

ppe-miR482a-5p

1.554364735

up

TRINITY_DN62981_c1_g1

-1.117358942

down

50S ribosomal protein L35, chloroplastic (Elaeis guineensis)

ppe-miR6262

-2.563930335

down

TRINITY_DN55866_c0_g1

1.905992499

up

Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial (Brachypodium distachyon)

ppe-miR6275

2.409852564

up

TRINITY_DN41916_c0_g1

-2.333725712

down

Clustered mitochondria protein (Musa acuminata)

ppe-miR8123-3p

5.013405557

up

TRINITY_DN54325_c0_g2

-2.902112441

down

Expansin-A4-like (Elaeis guineensis)

ppt-miR1048-3p

-1.635244915

down

TRINITY_DN71304_c1_g1

1.634822565

up

Ankyrin-1 isoform X2 (Elaeis guineensis)

ppt-miR2083-5p

1.411864472

up

TRINITY_DN63923_c0_g3

-1.187434507

down

50S ribosomal protein L29, chloroplastic-like (Vitis vinifera)

ppt-miR2083-5p

1.411864472

up

TRINITY_DN62493_c1_g2

-1.529507641

down

Ferric reduction oxidase 7, chloroplastic-like (Elaeis guineensis)

ppt-miR414

3.687774991

up

TRINITY_DN71797_c2_g2

-1.531825334

down

Lysine histidine transporter 2 (Arabidopsis thaliana)

ppt-miR414

3.687774991

up

TRINITY_DN74214_c3_g1

-1.662038819

down

Probable strigolactone esterase D14 (Phoenix dactylifera)

ppt-miR414

3.687774991

up

TRINITY_DN54254_c1_g1

-2.022678378

down

Uncharacterized protein (Oryza punctata)

ppt-miR414

3.687774991

up

TRINITY_DN73823_c3_g4

-1.775870081

down

Uncharacterized protein LOC101498079 (Cicer arietinum)

ptc-miR156k

-3.499915672

down

TRINITY_DN75067_c4_g1

1.435481162

up

Presequence protease 1, chloroplastic/mitochondrial-like (Musa acuminata)

ptc-miR396e-3p

-6.179188792

down

TRINITY_DN68263_c0_g2

1.41738653

up

Putative lysine-specific demethylase JMJD5 (Eucalyptus grandis)

smo-miR1091

-1.943586526

down

TRINITY_DN67006_c0_g2

2.373833497

up

Uncharacterized protein LOC105032422 (Elaeis guineensis)