Volume 10 Supplement 2

Proceedings of the Avian Genomics Conference and Gene Ontology Annotation Workshop

Proceedings

Edited by Susan M Bridges, Shane C Burgess and Fiona M McCarthy

Avian Genomics Conference and GO Annotation Workshop.

Starkville, MS, USA19-22 May 2008

Introduction to the Proceedings of the Avian Genomics and Gene Ontology Annotation Workshop

The Avian Genomics Conference and Gene Ontology Annotation Workshop brought together researchers and students from around the world to present their latest research addressing the delivery of value from the bi...

Authors: Susan M Bridges, Shane C Burgess and Fiona M McCarthy

Citation: BMC Genomics 2009 10(Suppl 2):I1

Content type: Introduction

Published on: 14 July 2009
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USDA animal genomics program: the view from the chicken coop

In 2007, the USDA Animal Genomics Strategic Planning Task Force prepared a Blueprint to direct national needs for future research, education, and extension efforts in agricultural animal genomics. This plan is...

Authors: Janet E Fulton

Citation: BMC Genomics 2009 10(Suppl 2):S1

Content type: Proceedings

Published on: 14 July 2009
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Extent and consistency of linkage disequilibrium and identification of DNA markers for production and egg quality traits in commercial layer chicken populations

The genome sequence and a high-density SNP map are now available for the chicken and can be used to identify genetic markers for use in marker-assisted selection (MAS). Effective MAS requires high linkage dise...

Authors: Behnam Abasht, Erin Sandford, Jesus Arango, Petek Settar, Janet E Fulton, Neil P O'Sullivan, Abebe Hassen, David Habier, Rohan L Fernando, Jack CM Dekkers and Susan J Lamont

Citation: BMC Genomics 2009 10(Suppl 2):S2

Content type: Proceedings

Published on: 14 July 2009
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Application of chicken microarrays for gene expression analysis in other avian species

With the threat of emerging infectious diseases such as avian influenza, whose natural hosts are thought to be a variety of wild water birds including duck, we are armed with very few genomic resources to inve...

Authors: Tamsyn M Crowley, Volker R Haring, Simon Burggraaf and Robert J Moore

Citation: BMC Genomics 2009 10(Suppl 2):S3

Content type: Proceedings

Published on: 14 July 2009
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The transcriptional response of Pasteurella multocida to three classes of antibiotics

Pasteurella multocida is a gram-negative bacterial pathogen that has a broad host range. One of the diseases it causes is fowl cholera in poultry. The availability of the genome sequence of avian P. multocida iso...

Authors: Bindu Nanduri, Leslie A Shack, Shane C Burgess and Mark L Lawrence

Citation: BMC Genomics 2009 10(Suppl 2):S4

Content type: Proceedings

Published on: 14 July 2009
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The chicken gene nomenclature committee report

Comparative genomics is an essential component of the post-genomic era. The chicken genome is the first avian genome to be sequenced and it will serve as a model for other avian species. Moreover, due to its u...

Authors: David W Burt, Wilfrid Carrë, Mark Fell, Andy S Law, Parker B Antin, Donna R Maglott, Janet A Weber, Carl J Schmidt, Shane C Burgess and Fiona M McCarthy

Citation: BMC Genomics 2009 10(Suppl 2):S5

Content type: Proceedings

Published on: 14 July 2009
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BioNetBuilder2.0: bringing systems biology to chicken and other model organisms

Systems Biology research tools, such as Cytoscape, have greatly extended the reach of genomic research. By providing platforms to integrate data with molecular interaction networks, researchers can more rapidl...

Authors: Jay H Konieczka, Kevin Drew, Alex Pine, Kevin Belasco, Sean Davey, Tatiana A Yatskievych, Richard Bonneau and Parker B Antin

Citation: BMC Genomics 2009 10(Suppl 2):S6

Content type: Proceedings

Published on: 14 July 2009
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Integrative sequence and tissue expression profiling of chicken and mammalian aquaporins

Proteins that selectively transport water across the membranes of cells are recognized as important in the normal functioning of the body systems of vertebrates. There are 13 known mammalian aquaporins (AQP0 t...

Authors: Raphael D Isokpehi, Rajendram V Rajnarayanan, Cynthia D Jeffries, Tolulola O Oyeleye and Hari HP Cohly

Citation: BMC Genomics 2009 10(Suppl 2):S7

Content type: Proceedings

Published on: 14 July 2009
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Genome evolution in Reptilia: in silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird

With the publication of the draft chicken genome and the recent production of several BAC clone libraries from non-avian reptiles and birds, it is now possible to undertake more detailed comparative genomic st...

Authors: Charles Chapus and Scott V Edwards

Citation: BMC Genomics 2009 10(Suppl 2):S8

Content type: Proceedings

Published on: 14 July 2009
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A bacterial artificial chromosome library for the Australian saltwater crocodile (Crocodylus porosus) and its utilization in gene isolation and genome characterization

Crocodilians (Order Crocodylia) are an ancient vertebrate group of tremendous ecological, social, and evolutionary importance. They are the only extant reptilian members of Archosauria, a monophyletic group th...

Authors: Xueyan Shan, David A Ray, John A Bunge and Daniel G Peterson

Citation: BMC Genomics 2009 10(Suppl 2):S9

Content type: Proceedings

Published on: 14 July 2009
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The value of avian genomics to the conservation of wildlife

Genomic studies in non-domestic avian models, such as the California condor and white-throated sparrow, can lead to more comprehensive conservation plans and provide clues for understanding mechanisms affectin...

Authors: Michael N Romanov, Elaina M Tuttle, Marlys L Houck, William S Modi, Leona G Chemnick, Marisa L Korody, Emily M Stremel Mork, Christie A Otten, Tanya Renner, Kenneth C Jones, Sugandha Dandekar, Jeanette C Papp, Yang Da, Eric D Green, Vincent Magrini, Matthew T Hickenbotham…

Citation: BMC Genomics 2009 10(Suppl 2):S10

Content type: Proceedings

Published on: 14 July 2009
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Proceedings of the Avian Genomics Conference and Gene Ontology Annotation Workshop

Proceedings

Introduction to the Proceedings of the Avian Genomics and Gene Ontology Annotation Workshop

USDA animal genomics program: the view from the chicken coop

Extent and consistency of linkage disequilibrium and identification of DNA markers for production and egg quality traits in commercial layer chicken populations

Application of chicken microarrays for gene expression analysis in other avian species

The transcriptional response of Pasteurella multocida to three classes of antibiotics

The chicken gene nomenclature committee report

BioNetBuilder2.0: bringing systems biology to chicken and other model organisms

Integrative sequence and tissue expression profiling of chicken and mammalian aquaporins

Genome evolution in Reptilia: in silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird

A bacterial artificial chromosome library for the Australian saltwater crocodile (Crocodylus porosus) and its utilization in gene isolation and genome characterization

The value of avian genomics to the conservation of wildlife

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