Volume 11 Supplement 4

Ninth International Conference on Bioinformatics (InCoB2010): Computational Biology


Edited by Christian Schönbach, Kenta Nakai, Tin Wee Tan and Shoba Ranganathan

Asia Pacific Bioinformatics Network (APBioNet) Ninth International Conference on Bioinformatics (InCoB2010). Go to conference site.

Tokyo, Japan

26-28 September 2010

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  1. Proceedings

    Sequence-dependent histone variant positioning signatures

    Nucleosome, the fundamental unit of chromatin, is formed by wrapping nearly 147bp of DNA around an octamer of histone proteins. This histone core has many variants that are different from each other by their b...

    Ngoc Tu Le, Tu Bao Ho and Bich Hai Ho

    BMC Genomics 2010 11(Suppl 4):S3

    Published on: 2 December 2010

  2. Proceedings

    dbDEMC: a database of differentially expressed miRNAs in human cancers

    MicroRNAs (miRNAs) are small noncoding RNAs about 22 nt long that negatively regulate gene expression at the post-transcriptional level. Their key effects on various biological processes, e.g., embryonic devel...

    Zhen Yang, Fei Ren, Changning Liu, Shunmin He, Gang Sun, Qian Gao, Lei Yao, Yangde Zhang, Ruoyu Miao, Ying Cao, Yi Zhao, Yang Zhong and Haitao Zhao

    BMC Genomics 2010 11(Suppl 4):S5

    Published on: 2 December 2010

  3. Proceedings

    UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/ genomic level

    Nucleic acid hybridization is an extensively adopted principle in biomedical research, in which the performance of any hybridization-based method depends on the specificity of probes to their targets. To deter...

    Shu-Hwa Chen, Chen-Zen Lo, Sheng-Yao Su, Bao-Han Kuo, Chao A Hsiung and Chung-Yen Lin

    BMC Genomics 2010 11(Suppl 4):S6

    Published on: 2 December 2010

  4. Proceedings

    NGSQC: cross-platform quality analysis pipeline for deep sequencing data

    While the accuracy and precision of deep sequencing data is significantly better than those obtained by the earlier generation of hybridization-based high throughput technologies, the digital nature of deep se...

    Manhong Dai, Robert C Thompson, Christopher Maher, Rafael Contreras-Galindo, Mark H Kaplan, David M Markovitz, Gil Omenn and Fan Meng

    BMC Genomics 2010 11(Suppl 4):S7

    Published on: 2 December 2010

  5. Proceedings

    Discovery and characterization of medaka miRNA genes by next generation sequencing platform

    MicroRNAs (miRNAs) are endogenous non-protein-coding RNA genes which exist in a wide variety of organisms, including animals, plants, virus and even unicellular organisms. Medaka (Oryzias latipes) is a useful mod...

    Sung-Chou Li, Wen-Ching Chan, Meng-Ru Ho, Kuo-Wang Tsai, Ling-Yueh Hu, Chun-Hung Lai, Chun-Nan Hsu, Pung-Pung Hwang and Wen-chang Lin

    BMC Genomics 2010 11(Suppl 4):S8

    Published on: 2 December 2010

  6. Proceedings

    In vitro homology search array comprehensively reveals highly conserved genes and their functional characteristics in non-sequenced species

    With the increase in genomic and transcriptomic data produced by the recent advancements in next generation sequencers and microarrays, it is now easier than ever to conduct large-scale comparative genomic stu...

    Atsushi Ogura, Masa-aki Yoshida, Mutsumi Fukuzaki and Jun Sese

    BMC Genomics 2010 11(Suppl 4):S9

    Published on: 2 December 2010

  7. Proceedings

    Refining orthologue groups at the transcript level

    Orthologues are genes in different species that are related through divergent evolution from a common ancestor and are expected to have similar functions. Many databases have been created to describe orthologo...

    Yizhen Jia, Thomas KF Wong, You-Qiang Song, Siu-Ming Yiu and David K Smith

    BMC Genomics 2010 11(Suppl 4):S11

    Published on: 2 December 2010

  8. Proceedings

    RNA editing of nuclear transcripts in Arabidopsis thaliana

    RNA editing is a transcript-based layer of gene regulation. To date, no systemic study on RNA editing of plant nuclear genes has been reported. Here, a transcriptome-wide search for editing sites in nuclear tr...

    Yijun Meng, Dijun Chen, YongFeng Jin, Chuanzao Mao, Ping Wu and Ming Chen

    BMC Genomics 2010 11(Suppl 4):S12

    Published on: 2 December 2010

  9. Proceedings

    Probing the anticancer mechanism of prospective herbal drug Withaferin A on mammals: a case study on human and bovine proteasomes

    The UPP (ubiquitin proteasome pathway) is the major proteolytic system in the cytosol and nucleus of all eukaryotic cells which regulates cellular events, including mitotis, differentiation, signal transductio...

    Abhinav Grover, Ashutosh Shandilya, Virendra S Bisaria and Durai Sundar

    BMC Genomics 2010 11(Suppl 4):S15

    Published on: 2 December 2010

  10. Proceedings

    Construction of a genetic AND gate under a new standard for assembly of genetic parts

    Appropriate regulation of respective gene expressions is a bottleneck for the realization of artificial biological systems inside living cells. The modification of several promoter sequences is required to ach...

    Shotaro Ayukawa, Akio Kobayashi, Yusaku Nakashima, Hidemasa Takagi, Shogo Hamada, Masahiko Uchiyama, Katsuyuki Yugi, Satoshi Murata, Yasubumi Sakakibara, Masami Hagiya, Masayuki Yamamura and Daisuke Kiga

    BMC Genomics 2010 11(Suppl 4):S16

    Published on: 2 December 2010

  11. Proceedings

    iCOD : an integrated clinical omics database based on the systems-pathology view of disease

    Variety of information relating between genome and the pathological findings in disease will yield a wealth of clues to discover new function, the role of genes and pathways, and future medicine. In addition t...

    Kazuro Shimokawa, Kaoru Mogushi, Satoshi Shoji, Atsuko Hiraishi, Keisuke Ido, Hiroshi Mizushima and Hiroshi Tanaka

    BMC Genomics 2010 11(Suppl 4):S19

    Published on: 2 December 2010

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