Volume 13 Supplement 2

Selected articles from the First IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS 2011): Genomics

Research

Edited by Ion Mandoiu, Teresa Przytycka, and Sanguthevar Rajasekaran

First IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS 2011). Go to conference site.

Orlando, FL, USA3-5 February 2011

CMRF: analyzing differential gene regulation in two group perturbation experiments

Microarray experiments often measure expressions of genes taken from sample tissues in the presence of external perturbations such as medication, radiation, or disease. The external perturbation can change the...

Authors: Nirmalya Bandyopadhyay, Manas Somaiya, Sanjay Ranka and Tamer Kahveci

Citation: BMC Genomics 2012 13(Suppl 2):S2

Content type: Research

Published on: 12 April 2012
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High-performance biocomputing for simulating the spread of contagion over large contact networks

Many important biological problems can be modeled as contagion diffusion processes over interaction networks. This article shows how the EpiSimdemics interaction-based simulation system can be applied to the g...

Authors: Keith R Bisset, Ashwin M Aji, Madhav V Marathe and Wu-chun Feng

Citation: BMC Genomics 2012 13(Suppl 2):S3

Content type: Research

Published on: 12 April 2012
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Haplotype and minimum-chimerism consensus determination using short sequence data

Assembling haplotypes given sequence data derived from a single individual is a well studied problem, but only recently has haplotype assembly been considered for population-sampled data. We discuss a software...

Authors: Shawn T O'Neil and Scott J Emrich

Citation: BMC Genomics 2012 13(Suppl 2):S4

Content type: Research

Published on: 12 April 2012
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A graph-theoretic approach for classification and structure prediction of transmembrane β-barrel proteins

Transmembrane β-barrel proteins are a special class of transmembrane proteins which play several key roles in human body and diseases. Due to experimental difficulties, the number of transmembrane β-barrel protei...

Authors: Van Du T Tran, Philippe Chassignet, Saad Sheikh and Jean-Marc Steyaert

Citation: BMC Genomics 2012 13(Suppl 2):S5

Content type: Research

Published on: 12 April 2012
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Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data

Massively parallel transcriptome sequencing (RNA-Seq) is becoming the method of choice for studying functional effects of genetic variability and establishing causal relationships between genetic variants and ...

Authors: Jorge Duitama, Pramod K Srivastava and Ion I Măndoiu

Citation: BMC Genomics 2012 13(Suppl 2):S6

Content type: Research

Published on: 12 April 2012
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Identification of conserved splicing motifs in mutually exclusive exons of 15 insect species

During alternative splicing, the inclusion of an exon in the final mRNA molecule is determined by nuclear proteins that bind cis-regulatory sequences in a target pre-mRNA molecule. A recent study suggested tha...

Authors: Patricia Buendia, John Tyree, Robert Loredo and Shu-Ning Hsu

Citation: BMC Genomics 2012 13(Suppl 2):S1

Content type: Research

Published on: 12 April 2012
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Selected articles from the First IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS 2011): Genomics

Research

CMRF: analyzing differential gene regulation in two group perturbation experiments

High-performance biocomputing for simulating the spread of contagion over large contact networks

Haplotype and minimum-chimerism consensus determination using short sequence data

A graph-theoretic approach for classification and structure prediction of transmembrane β-barrel proteins

Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data

Identification of conserved splicing motifs in mutually exclusive exons of 15 insect species

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