Volume 17 Supplement 13

15th International Conference on Bioinformatics (InCoB 2016): Genomics

Research

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.

Queenstown, Singapore

21-23 September 2016

Edited by Christian Schönbach, Chandra Verma, Peter J. Bond and Shoba Ranganathan

Related articles have been published as a supplement to BMC Bioinformatics, BMC Medical Genomics and BMC Systems Biology.

  1. Introduction

    2016 update on APBioNet’s annual international conference on bioinformatics (InCoB)

    InCoB became since its inception in 2002 one of the largest annual bioinformatics conferences in the Asia-Pacific region with attendance ranging between 150 and 250 delegates depending on the venue location. I...

    Christian Schönbach, Chandra Verma, Lawrence Jin Kiat Wee, Peter John Bond and Shoba Ranganathan

    BMC Genomics 2016 17(Suppl 13):1036

    Published on: 22 December 2016

  2. Research

    A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data

    The ability to sequence the transcriptomes of single cells using single-cell RNA-seq sequencing technologies presents a shift in the scientific paradigm where scientists, now, are able to concurrently investig...

    Yongli Hu, Takeshi Hase, Hui Peng Li, Shyam Prabhakar, Hiroaki Kitano, See Kiong Ng, Samik Ghosh and Lawrence Jin Kiat Wee

    BMC Genomics 2016 17(Suppl 13):1025

    Published on: 22 December 2016

  3. Research

    Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri

    Gene copy number divergence between species is a form of genetic polymorphism that contributes significantly to both genome size and phenotypic variation. In plants, copy number expansions of single genes were...

    Vasantika Suryawanshi, Ina N. Talke, Michael Weber, Roland Eils, Benedikt Brors, Stephan Clemens and Ute Krämer

    BMC Genomics 2016 17(Suppl 13):1034

    Published on: 22 December 2016

  4. Research

    Knockdown of POLA2 increases gemcitabine resistance in lung cancer cells

    Gemcitabine is used as a standard drug treatment for non-small cell lung cancer (NSCLC), but treatment responses vary among patients. Our previous studies demonstrated that POLA2 + 1747 GG/GA single nucleotide...

    Vivien Koh, Hsueh Yin Kwan, Woei Loon Tan, Tzia Liang Mah and Wei Peng Yong

    BMC Genomics 2016 17(Suppl 13):1029

    Published on: 22 December 2016

  5. Research

    Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs

    Immune cells have to change their gene expression patterns dynamically in response to external stimuli such as lipopolysaccharide (LPS). The gene expression is regulated at multiple steps in eukaryotic cells, ...

    Yutaro Kumagai, Alexis Vandenbon, Shunsuke Teraguchi, Shizuo Akira and Yutaka Suzuki

    BMC Genomics 2016 17(Suppl 13):1032

    Published on: 22 December 2016

  6. Research

    TEA: the epigenome platform for Arabidopsis methylome study

    Bisulfite sequencing (BS-seq) has become a standard technology to profile genome-wide DNA methylation at single-base resolution. It allows researchers to conduct genome-wise cytosine methylation analyses on is...

    Sheng-Yao Su, Shu-Hwa Chen, I-Hsuan Lu, Yih-Shien Chiang, Yu-Bin Wang, Pao-Yang Chen and Chung-Yen Lin

    BMC Genomics 2016 17(Suppl 13):1027

    Published on: 22 December 2016

  7. Research

    Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification

    Proteogenomics is a promising approach for various tasks ranging from gene annotation to cancer research. Databases for proteogenomic searches are often constructed by adding peptide sequences inferred from ge...

    Honglan Li, Yoon Sung Joh, Hyunwoo Kim, Eunok Paek, Sang-Won Lee and Kyu-Baek Hwang

    BMC Genomics 2016 17(Suppl 13):1031

    Published on: 22 December 2016

  8. Research

    ESAP plus: a web-based server for EST-SSR marker development

    Simple sequence repeats (SSRs) have become widely used as molecular markers in plant genetic studies due to their abundance, high allelic variation at each locus and simplicity to analyze using conventional PC...

    Piyarat Ponyared, Jiradej Ponsawat, Sissades Tongsima, Pusadee Seresangtakul, Chutipong Akkasaeng and Nathpapat Tantisuwichwong

    BMC Genomics 2016 17(Suppl 13):1035

    Published on: 22 December 2016

  9. Research

    Genome-wide analysis of mRNAs associated with mouse peroxisomes

    RNA is often targeted to be localized to the specific subcellular compartments. Specific localization of mRNA is believed to be an important mechanism for targeting their protein products to the locations, whe...

    Aliaksandr A. Yarmishyn, Maksym Kremenskoy, Arsen O. Batagov, Axel Preuss, Jin Huei Wong and Igor V. Kurochkin

    BMC Genomics 2016 17(Suppl 13):1028

    Published on: 22 December 2016

Portable peer review

The editors of BMC Genomics support initiatives that expedite the peer review process and are happy to consider manuscripts that have been reviewed in Peerage of Science. Please indicate in your cover letter if this applies to your manuscript.

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