Volume 20 Supplement 10

Proceedings of the Joint International GIW & ABACBS-2019 Conference: genomics

Research

Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. Supplement Editors were not responsible for the review of papers they had authored. No other competing interests were declared.

Sydney, Australia9-11 December 2019

Edited by Joshua Ho, Kyung-Ah Sohn, Jiangning Song, Tatsuya Akutsu, Shoba Ranganathan and Jinyan Li

Conference website

iPseU-NCP: Identifying RNA pseudouridine sites using random forest and NCP-encoded features

Pseudouridine modification is most commonly found among various kinds of RNA modification occurred in both prokaryotes and eukaryotes. This biochemical event has been proved to occur in multiple types of RNAs,...

Authors: Thanh-Hoang Nguyen-Vo, Quang H. Nguyen, Trang T.T. Do, Thien-Ngan Nguyen, Susanto Rahardja and Binh P. Nguyen

Citation: BMC Genomics 2019 20(Suppl 10):971

Content type: Methodology Published on: 30 December 2019
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Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation

Super-enhancer RNAs (seRNAs) are a kind of noncoding RNA transcribed from super-enhancer regions. The regulation mechanism and functional role of seRNAs are still unclear. Although super-enhancers play a criti...

Authors: Hao-Chun Chang, Hsuan-Cheng Huang, Hsueh-Fen Juan and Chia-Lang Hsu

Citation: BMC Genomics 2019 20(Suppl 10):896

Content type: Research Published on: 30 December 2019
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Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco

Read alignment and transcript assembly are the core of RNA-seq analysis for transcript isoform discovery. Nonetheless, current tools are not designed to be scalable for analysis of full-length bulk or single c...

Authors: Andrian Yang, Abhinav Kishore, Benjamin Phipps and Joshua W. K. Ho

Citation: BMC Genomics 2019 20(Suppl 10):927

Content type: Software Published on: 30 December 2019
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Deep analysis and optimization of CARD antibiotic resistance gene discovery models

Identification of antibiotic resistance genes from environmental samples has been a critical sub-domain of gene discovery which is directly connected to human health. However, it is drawing extraordinary atten...

Authors: Haobin Yao and Siu-Ming Yiu

Citation: BMC Genomics 2019 20(Suppl 10):914

Content type: Research Published on: 30 December 2019
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Sketch distance-based clustering of chromosomes for large genome database compression

The rapid development of Next-Generation Sequencing technologies enables sequencing genomes with low cost. The dramatically increasing amount of sequencing data raised crucial needs for efficient compression a...

Authors: Tao Tang, Yuansheng Liu, Buzhong Zhang, Benyue Su and Jinyan Li

Citation: BMC Genomics 2019 20(Suppl 10):978

Content type: Research Published on: 30 December 2019
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Proceedings of the Joint International GIW & ABACBS-2019 Conference: genomics

Research

iPseU-NCP: Identifying RNA pseudouridine sites using random forest and NCP-encoded features

Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation

Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco

Deep analysis and optimization of CARD antibiotic resistance gene discovery models

Sketch distance-based clustering of chromosomes for large genome database compression

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