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  1. Mycoplasmopsis (M.) bovis, the agent of mastitis, pneumonia, and arthritis in cattle, harbors a small genome of approximately 1 Mbp. Combining data from Illumina and Nanopore technologies, we sequenced and assemb...

    Authors: Sandra Triebel, Konrad Sachse, Michael Weber, Martin Heller, Celia Diezel, Martin Hölzer, Christiane Schnee and Manja Marz
    Citation: BMC Genomics 2023 24:548
    Content type: Research Published on:

  2. Genetic diversity and heterogeneous genomic signatures in marine fish populations may result from selection pressures driven by the strong effects of environmental change. Nearshore fishes are often exposed to...

    Authors: Xiang Zhao, Tianlun Zheng, Tianxiang Gao and Na Song
    Citation: BMC Genomics 2023 24:547
    Content type: Research Published on:

  3. Haemorrhagic septicaemia (HS) is a highly fatal and predominant disease in livestock, particularly cattle and buffalo in the tropical regions of the world. Pasteurella multocida (P. multocida), serotypes B:2 and ...

    Authors: Sadia Mahboob, Nimat Ullah, Muhammad Farhan Ul Haque, Waqar Rauf, Mazhar Iqbal, Amjad Ali and Moazur Rahman
    Citation: BMC Genomics 2023 24:546
    Content type: Research Published on:

  4. Teleost fish have evolved various adaptations that allow them to tolerate cold water conditions. However, the underlying mechanism of this adaptation is poorly understood in Tibetan Plateau fish. RNA-seq combi...

    Authors: Sijia Liu, Fei Tian, Delin Qi, Hongfang Qi, Yang Wang, Shixiao Xu and Kai Zhao
    Citation: BMC Genomics 2023 24:545
    Content type: Research Published on:

  5. Domains of unknown function (DUF) proteins are a number of uncharacterized and highly conserved protein families in eukaryotes. In plants, some DUFs have been predicted to play important roles in development a...

    Authors: Kai Chen, Yilin Wang, Xiaoyan Nong, Yichi Zhang, Tang Tang, Yun Chen, Qikun Shen, Changjie Yan and Bing Lü
    Citation: BMC Genomics 2023 24:544
    Content type: Research Published on:

  6. Macrocystis pyrifera (giant kelp), is a brown macroalga of great ecological importance as a primary producer and structure-forming foundational species that provides habitat for hundreds of species. It has many c...

    Authors: Jose Diesel, Gary Molano, Gabriel J. Montecinos, Kelly DeWeese, Sara Calhoun, Alan Kuo, Anna Lipzen, Asaf Salamov, Igor V. Grigoriev, Daniel C. Reed, Robert J. Miller, Sergey V. Nuzhdin and Filipe Alberto
    Citation: BMC Genomics 2023 24:543
    Content type: Research Published on:

  7. Plasmodium falciparum malaria is a leading cause of pediatric morbidity and mortality in holoendemic transmission areas. Severe malarial anemia [SMA, hemoglobin (Hb) < 5.0 g/dL in children] is the most common cli...

    Authors: Clinton O. Onyango, Qiuying Cheng, Elly O. Munde, Evans Raballah, Samuel B. Anyona, Benjamin H. McMahon, Christophe G. Lambert, Patrick O. Onyango, Kristan A. Schneider, Douglas J. Perkins and Collins Ouma
    Citation: BMC Genomics 2023 24:542
    Content type: Research Published on:

  8. The AP2/ERF transcription factor is widely distributed across the plant kingdom and plays a crucial role in various abiotic stress responses in plants. Tritipyrum, an octoploid resulting from an intergeneric cros...

    Authors: Xiaojuan Liu, Guangyi Zhou, Songshu Chen, Zhenzhen Jia, Suqin Zhang, Mingjian Ren and Fang He
    Citation: BMC Genomics 2023 24:541
    Content type: Research Published on:

  9. Intramuscular fat (IMF) content is the major indicator for evaluating chicken meat quality due to its positive correlation with tenderness, juiciness, and flavor. An increasing number of studies are focusing o...

    Authors: Shuaipeng Zhu, Binbin Zhang, Tingqi Zhu, Dongxue Wang, Cong Liu, Yixuan Liu, Yuehua He, Wenjie Liang, Wenting Li, Ruili Han, Donghua Li, Fengbin Yan, Yadong Tian, Guoxi Li, Xiangtao Kang, Zhuanjian Li…
    Citation: BMC Genomics 2023 24:540
    Content type: Research Published on:

  11. Rhodophyta are among the closest known relatives of green plants. Studying the codons of their genomes can help us understand the codon usage pattern and characteristics of the ancestor of green plants. By stu...

    Authors: Huipeng Yao, Tingting Li, Zheng Ma, Xiyuan Wang, Lixiao Xu, Yuxin Zhang, Yi Cai and Zizhong Tang
    Citation: BMC Genomics 2023 24:538
    Content type: Research Published on:

  12. The mechanism of grain development in elite maize breeding lines has not been fully elucidated. Grain length, grain width and grain weight are key components of maize grain yield. Previously, using the Chinese...

    Authors: Qing Cai, Fuchao Jiao, Qianqian Wang, Enying Zhang, Xiyun Song, Yuhe Pei, Jun Li, Meiai Zhao and Xinmei Guo
    Citation: BMC Genomics 2023 24:537
    Content type: Research Published on:

  13. Paenarthrobacter nicotinovorans ATCC 49919 uses the pyridine-pathway to degrade nicotine and could provide a renewable source of precursors from nicotine-containing waste as well as a model for studying the molec...

    Authors: Amada El-Sabeh, Andreea-Mihaela Mlesnita, Iustin-Tiberius Munteanu, Iasmina Honceriu, Fakhri Kallabi, Razvan-Stefan Boiangiu and Marius Mihasan
    Citation: BMC Genomics 2023 24:536
    Content type: Research Published on:

  15. Biological denitrification has been commonly adopted for the removal of nitrogen from sewage effluents. However, due to the low temperature during winter, microorganisms in the wastewater biological treatment ...

    Authors: Yong-Qiang Hu, Yin-Xin Zeng, Yu Du, Wei Zhao, Hui-Rong Li, Wei Han, Ting Hu and Wei Luo
    Citation: BMC Genomics 2023 24:534
    Content type: Research Published on:

  17. Surgical resection remains a critical treatment option for many patients with primary and secondary hepatic neoplasms. Extended hepatectomy (eHx) may be required for some patients with large tumors, which may ...

    Authors: Zeyuan Li, Bo Peng, Shilian Chen, Jiaping Li, Kai Hu, Lijuan Liao, Qiuli Xie, Mei Yao, Lixing Liang, Stephen Tomlinson, Guandou Yuan and Songqing He
    Citation: BMC Genomics 2023 24:532
    Content type: Research Published on:

  18. Due to the influence of extreme weather, the environment in China’s main cotton-producing areas is prone to drought stress conditions, which affect the growth and development of cotton and lead to a decrease i...

    Authors: Fenglei Sun, Yanlong Yang, Penglong Wang, Jun Ma and Xiongming Du
    Citation: BMC Genomics 2023 24:531
    Content type: Research Published on:

  19. Ligilactobacillus salivarius has been frequently isolated from the gut microbiota of humans and domesticated animals and has been studied as a candidate probiotic. Badger (Meles meles) is known as a “generalist” ...

    Authors: Yu Wang, Xiaomeng Xu, Huan Chen, Fang Yang, Bo Xu, Kun Wang, Qianwen Liu, Guixin Liang, Ruiqi Zhang, Xin’an Jiao and Yunzeng Zhang
    Citation: BMC Genomics 2023 24:530
    Content type: Research Published on:

  20. Environmental changes are expected to intensify in the future. The invasion of toxic plants under environmental changes may change herbivore feeding environments. Herbivores living long-term in toxic plant-fee...

    Authors: Yuchen Tan, Yanli Wang, Qianqian Liu, Zhicheng Wang, Shangli Shi and Junhu Su
    Citation: BMC Genomics 2023 24:529
    Content type: Research Published on:

  22. The harsh conditions of high-altitude environments are known to drive the evolution of physiological and morphological traits in endothermic animals. These conditions are expected to result in the adaptive evo...

    Authors: Edgar G. Gutiérrez, Jorge Ortega, Avery Savoie and J. Antonio Baeza
    Citation: BMC Genomics 2023 24:527
    Content type: Research Published on:

  23. To combat drought stress in rice, a major threat to global food security, three major quantitative trait loci for ‘yield under drought stress’ (qDTYs) were successfully exploited in the last decade. However, t...

    Authors: Deepesh Kumar, M. K. Ramkumar, Bipratip Dutta, Ajay Kumar, Rakesh Pandey, Pradeep Kumar Jain, Kishor Gaikwad, Dwijesh C. Mishra, K. K. Chaturvedi, Anil Rai, Amolkumar U. Solanke and Amitha Mithra Sevanthi
    Citation: BMC Genomics 2023 24:526
    Content type: Research Published on:

  24. The incidence of kidney disease caused by thyroid cancer is rising worldwide. Observational studies cannot recognize whether thyroid cancer is independently associated with kidney disease. We performed the Men...

    Authors: Ziwei Mei, Fuhao Li, Ruizhen Chen, Zilong Xiao, Dongsheng Cai, Lie Jin, Xu Qian, Yucheng Wang and Jun Chen
    Citation: BMC Genomics 2023 24:525
    Content type: Research Published on:

  25. Gut microbiota plays a significant role in host survival, health, and diseases; however, compared to other livestock, research on the gut microbiome of donkeys is limited.

    Authors: Rong Guo, Wei Zhang, Wei Shen, Guoliang Zhang, Taifeng Xie, Ling Li, Jiacuo Jinmei, Yiduan Liu, Fanyong Kong, Baozhu Guo, Benke Li, Yujiang Sun and Shuqin Liu
    Citation: BMC Genomics 2023 24:524
    Content type: Research Published on:

  26. Ubiquitination controls almost all cellular processes. The dysregulation of ubiquitination signals is closely associated with the initiation and progression of multiple diseases. However, there is little compr...

    Authors: Deyu Long, Ruiqi Zhang, Changjian Du, Jiapei Tong, Yu Ni, Yaqi Zhou, Yongchun Zuo and Mingzhi Liao
    Citation: BMC Genomics 2023 24:523
    Content type: Research Published on:

  27. Evident adolescent idiopathic scoliosis (AIS) incurs high treatment costs, low quality of life, and many complications. Early screening of AIS is essential to avoid progressing to an evident stage. However, th...

    Authors: Zhenxuan Shao, Zengjie Zhang, Yiting Tu, Chongan Huang, Liang Chen, Anna Sun, Sunren Sheng, Xiaolei Zhang and Yan Wu
    Citation: BMC Genomics 2023 24:522
    Content type: Research Published on:

  28. The autosomal dominant form of polycystic kidney disease (ADPKD) is the most common hereditary disease that causes late-onset renal cyst development and end-stage renal disease. Preimplantation genetic testing...

    Authors: Cuiting Peng, Han Chen, Jun Ren, Fan Zhou, Yutong Li, Yuezhi Keqie, Taoli Ding, Jiangxing Ruan, He Wang, Xinlian Chen and Shanling Liu
    Citation: BMC Genomics 2023 24:521
    Content type: Research Published on:

  29. Symbiotic nitrogen fixation differs among Bradyrhizobium japonicum strains. Soybean inoculated with USDA123 has a lower yield than strains known to have high nitrogen fixation efficiency, such as USDA110. In the ...

    Authors: Susan Araya, Patrick Elia, Charles V. Quigley and Qijian Song
    Citation: BMC Genomics 2023 24:520
    Content type: Research Published on:

  30. Substantial variation in male fertility is regularly observed in farmed Arctic charr. However, detailed investigations of its fluctuation during a reproductive season and across years are lacking. Furthermore,...

    Authors: Khrystyna Kurta, Henrik Jeuthe, Rakan Naboulsi, Dirk-Jan de Koning and Christos Palaiokostas
    Citation: BMC Genomics 2023 24:519
    Content type: Research Published on:

  32. Previous preliminary work found that Latroeggtoxin-VI (LETX-VI), a proteinaceous neurotoxin from the eggs of spider Latrodectus tredecimguttatus, could promote the synthesis and release of dopamine in PC12 cells....

    Authors: Dianmei Yu, Haiyan Wang, Zhixiang Lei, Yiwen Zhai, Si Chen, Minglu Sun, Panfeng Yin and Xianchun Wang
    Citation: BMC Genomics 2023 24:517
    Content type: Research Published on:

  33. Anatabine, although being one of four major tobacco alkaloids, is never accumulated in high quantity in any of the naturally occurring species from the Nicotiana genus. Previous studies therefore focused on trans...

    Authors: Kacper Piotr Kaminski, Lucien Bovet, Aurore Hilfiker, Helene Laparra, Joanne Schwaar, Nicolas Sierro, Gerhard Lang, Damien De Palo, Philippe Alexandre Guy, Csaba Laszlo, Simon Goepfert and Nikolai V. Ivanov
    Citation: BMC Genomics 2023 24:516
    Content type: Research Published on:

  34. Increasing grain nutritional value in sorghum (Sorghum bicolor) is a paramount breeding objective, as is increasing drought resistance (DR), because sorghum is grown mainly in drought-prone areas. The genetic bas...

    Authors: Nasrein Mohamed Kamal, Yasir Serag Alnor Gorafi, Hisashi Tomemori, June-Sik Kim, Gamila Mohamed Idris Elhadi and Hisashi Tsujimoto
    Citation: BMC Genomics 2023 24:515
    Content type: Research Published on:

  35. The cellular and molecular dynamics of human prepuce are crucial for understanding its biological and physiological functions, as well as the prevention of related genital diseases. However, the cellular compo...

    Authors: Fei Tan, Yuan Xuan, Lan Long, Yang Yu, Chunhua Zhang, Pengchen Liang, Yaoqun Wang, Meiyu Chen, Jiling Wen and Geng Chen
    Citation: BMC Genomics 2023 24:514
    Content type: Research Published on:

  36. Atabecestat, a potent brain penetrable BACE1 inhibitor that reduces CSF amyloid beta (Aβ), was developed as an oral treatment for Alzheimer’s disease (AD). Elevated liver enzyme adverse events were reported in...

    Authors: Qingqin S. Li, Stephan Francke, Jan Snoeys, John Thipphawong, Gary Romano and Gerald P. Novak
    Citation: BMC Genomics 2023 24:513
    Content type: Research Published on:

  37. The nucleolus is a large nuclear body that serves as the primary site for ribosome biogenesis. Recent studies have suggested that it also plays an important role in organizing chromatin architecture. However,...

    Authors: Trevor F. Freeman, Qiuxia Zhao, Agustian Surya, Reed Rothe and Elif Sarinay Cenik
    Citation: BMC Genomics 2023 24:512
    Content type: Software Published on:

  38. As the prepubertal stage is a crucial point for the proper development of the mammary gland and milk production, this study aims to evaluate how protein restriction at this stage can affect methylation marks i...

    Authors: P. A. S. Fonseca, A. Suárez-Vega, C. Esteban-Blanco, R. Pelayo, H. Marina, B. Gutiérrez-Gil and J. J. Arranz
    Citation: BMC Genomics 2023 24:511
    Content type: Research Published on:

  39. Along with global warming, resulting in crop production, exacerbating the global food crisis. Therefore, it is urgent to study the mechanism of plant heat resistance. However, crop resistance genes were lost d...

    Authors: Yarong Jin, Jinchan Luo, Yuchen Yang, Jiyuan Jia, Min Sun, Xiaoshan Wang, Imran Khan, Dejun Huang and Linkai Huang
    Citation: BMC Genomics 2023 24:510
    Content type: Research Published on:

  40. Structural descriptions of complete genomes have elucidated evolutionary processes in angiosperms. In Cactaceae (Caryophyllales), a high structural diversity of the chloroplast genome has been identified withi...

    Authors: David Cruz Plancarte and Sofía Solórzano
    Citation: BMC Genomics 2023 24:509
    Content type: Research Published on:

  41. Cold-adapted archaea have diverse ecological roles in a wide range of low-temperature environments. Improving our knowledge of the genomic features that enable psychrophiles to grow in cold environments helps ...

    Authors: Liangzhong Chen, Tao Hong, Zirui Wu, Weizhi Song, Shaoxing X. Chen, Yongqin Liu and Liang Shen
    Citation: BMC Genomics 2023 24:508
    Content type: Research Published on:

  42. The Mongolian gazelle (Procapra gutturosa) population has shown a considerable range of contractions and local extinctions over the last century, owing to habitat fragmentation and poaching. A thorough understand...

    Authors: Lupeng Shi, Xiufeng Yang, Muha Cha, Tianshu Lyu, Lidong Wang, Shengyang Zhou, Yuehuan Dong, Huashan Dou and Honghai Zhang
    Citation: BMC Genomics 2023 24:507
    Content type: Research Published on:

  43. The emergence and wide spread of carbapenemase-producing Enterobacteriaceae (CPE) poses a growing threat to global public health. However, clinically derived carbapenemase-producing Citrobacter causing multiple i...

    Authors: Jianzhong Ye, Lulu Jin, Yaling Li, Hao Xu, Yishuai Lin, Tieli Zhou, Beiwen Zheng, Maofeng Wang and Zhongyong Wang
    Citation: BMC Genomics 2023 24:506
    Content type: Research Published on:

  44. Blueberries (Vaccinium corymbosum) are regarded as “superfoods” attributed to large amounts of anthocyanins, a group of flavonoid metabolites, which provide pigmentation in plant and beneficial effects for human ...

    Authors: Haiyang Wang, Lulu Zhai, Shouwen Wang, Botian Zheng, Honglu Hu, Xuyan Li and Shaomin Bian
    Citation: BMC Genomics 2023 24:505
    Content type: Research Published on:

  45. Laccases are green biocatalysts with wide industrial applications. The study of efficient and specific laccase producers remains a priority. Cerrena species have been shown to be promising basidiomycete candidate...

    Authors: Long-Bin Zhang, Wu-Wei-Jie Yang and Ting-Ting Qiu
    Citation: BMC Genomics 2023 24:504
    Content type: Research Published on:

  46. Cadmium (Cd) flows into the ocean with industrial and agricultural pollution and significantly affects the growth and development of economic cephalopods such as Sepia esculenta, Amphioctopus fangsiao, and Loligo...

    Authors: Xiumei Liu, Xiaokai Bao, Jianmin Yang, Xibo Zhu and Zan Li
    Citation: BMC Genomics 2023 24:503
    Content type: Research Published on:

  47. As an important reproductive hormone, melatonin plays an important role in regulating the reproductive activities of sheep and other mammals. Hu sheep is a breed favoring for meat, with prolific traits. In ord...

    Authors: Hao Wu, Wenkui Ma, Laiqing Yan, Fenze Liu, Shang Xu, Pengyun Ji, Shuai Gao, Lu Zhang and Guoshi Liu
    Citation: BMC Genomics 2023 24:502
    Content type: Research Published on:

  48. Helcococcus ovis (H. ovis) is an emerging bacterial pathogen that commonly causes opportunistic respiratory, mammary, and uterine infections across mammalian hosts. This study applied long- and short-read whole g...

    Authors: Federico Cunha, Segundo Casaro, Kristi L. Jones, Rafael S. Bisinotto, Subhashinie Kariyawasam, Mary B. Brown and Klibs N. Galvão
    Citation: BMC Genomics 2023 24:501
    Content type: Research Published on:

  49. Plant organs grow in a certain direction and organ twisted growth, a rare and distinctive trait, is associated with internal structure changes and special genes. The twisted branch mutant of Chinese jujube juj...

    Authors: Zhi Luo, Mengjiao Gao, Xuan Zhao, Lihu Wang, Zhiguo Liu, Lixin Wang, Lili Wang, Jin Zhao, Jiurui Wang and Mengjun Liu
    Citation: BMC Genomics 2023 24:500
    Content type: Research Published on:

  50. This paper aims to explore the role of circRNA expression profiles and circRNA-associated ceRNA networks in the regulation of myogenesis in the longissimus dorsi of cattle breeds surviving under subtropical co...

    Authors: Chuang Yang, Longfei Wu, Yongqing Guo, Yaokun Li, Ming Deng, Dewu Liu, Guangbin Liu and Baoli Sun
    Citation: BMC Genomics 2023 24:499
    Content type: Research Published on:

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BMC Genomics

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