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  1. Pigs serve as a crucial source of protein in the human diet and play a fundamental role in ensuring food security. However, infectious diseases caused by bacteria or viruses are a major threat to effective glo...

    Authors: Jinyan Yang, Siqian Chen, Fuping Ma, Ning Ding, Siyuan Mi, Qingyao Zhao, Yue Xing, Ting Yang, Kai Xing, Ying Yu and Chuduan Wang
    Citation: BMC Genomics 2024 25:719
    Content type: Research Published on:

  2. Our understanding of particular gut microbiota members such as Bifidobacterium and Enterococcus in low-middle-income countries remains very limited, particularly early life strain-level beneficial traits. This st...

    Authors: Taona Emmah Mudhluli, Magdalena Kujawska, Julia Mueller, Angela Felsl, Bastian-Alexander Truppel, Lindsay J. Hall, Inam Chitsike, Exnevia Gomo and Danai Tavonga Zhou
    Citation: BMC Genomics 2024 25:718
    Content type: Research Published on:

  3. In bivalves, the rate at which organisms grow is a major functional trait underlying many aspects of their commercial production. Growth is a highly polygenic trait, which is typically regulated by many genes ...

    Authors: Y. Dorant, V. Quillien, J. Le Luyer and C. L. Ky
    Citation: BMC Genomics 2024 25:717
    Content type: Research Published on:

  4. Paulownia, an ecologically and economically valuable plant species native to China, is notable for its excellent timber quality and strong adaptability. Among them, Paulownia catalpifolia displays the ability to ...

    Authors: Baojun Liu, Jiang Su, Chuanming Fu, Kanghua Xian, Jinxiang He and Ningzhen Huang
    Citation: BMC Genomics 2024 25:716
    Content type: Research Published on:

  6. Elaeocarpus spp. stem blight, caused by Pseudocryphonectria elaeocarpicola, is a destructive disease, which will significantly reduce the productivity and longevity of Elaeocarpus spp. plants, especially in the G...

    Authors: Yuchen Yang, Dianguang Xiong, Danyang Zhao, Huayi Huang and Chengming Tian
    Citation: BMC Genomics 2024 25:714
    Content type: Research Published on:

  7. Swamp-type buffaloes with varying degrees of white spotting are found exclusively in Tana Toraja, South Sulawesi, Indonesia, where spotted buffalo bulls are highly valued in accordance with the Torajan customs...

    Authors: Dongmei Dai, Eka Meutia Sari, Jingfang Si, Hidayat Ashari, Muhammad Ihsan Andi Dagong, Alfredo Pauciullo, Johannes A. Lenstra, Jianlin Han and Yi Zhang
    Citation: BMC Genomics 2024 25:713
    Content type: Research Published on:

  9. Bacterial spot of pepper (BSP), caused by four different Xanthomonas species, primarily X. euvesicatoria (Xe), poses a significant challenge in pepper cultivation. Host resistance is considered the most important...

    Authors: Aastha Subedi, Gerald V. Minsavage, Pamela D. Roberts, Erica M. Goss, Anuj Sharma and Jeffrey B. Jones
    Citation: BMC Genomics 2024 25:711
    Content type: Research Published on:

  10. Identifying the DNA-binding specificities of transcription factors (TF) is central to understanding gene networks that regulate growth and development. Such knowledge is lacking in oomycetes, a microbial eukar...

    Authors: Nguyen N. T. Vo, Ally Yang, Wiphawee Leesutthiphonchai, Yulong Liu, Timothy R. Hughes and Howard S. Judelson
    Citation: BMC Genomics 2024 25:710
    Content type: Research Published on:

  11. Whole genome analysis for microbial genomics is critical to studying and monitoring antimicrobial resistance strains. The exponential growth of microbial sequencing data necessitates a fast and scalable comput...

    Authors: Duc Quang Le, Tam Thi Nguyen, Canh Hao Nguyen, Tho Huu Ho, Nam S. Vo, Trang Nguyen, Hoang Anh Nguyen, Le Sy Vinh, Thanh Hai Dang, Minh Duc Cao and Son Hoang Nguyen
    Citation: BMC Genomics 2024 25:709
    Content type: Software Published on:

  12. As a nexus of routine antibiotic use and zoonotic pathogen presence, the livestock farming environment is a potential hotspot for the emergence of zoonotic diseases and antibiotic resistant bacteria. Livestock...

    Authors: Pauline Trinh, Sarah Teichman, Marilyn C. Roberts, Peter M. Rabinowitz and Amy D. Willis
    Citation: BMC Genomics 2024 25:708
    Content type: Research Published on:

  13. Most studied, investigating transcriptional changes in myocardial biopsies focus on human genes. However, the presence and potential consequence of persistent expression of viral genes within the myocardium is...

    Authors: Markus B. Heckmann, Daniel Finke, Leander Sauerbrey, Norbert Frey and Lorenz H. Lehmann
    Citation: BMC Genomics 2024 25:707
    Content type: Research Published on:

  14. According to Chinese ancient books, both fruits and rhizomes of Polygonatum cyrtonema Hua have medicinal and edible values. Up to now, there is no report about the metabolite profiles and regulatory network in fr...

    Authors: Luyun Ning, Yuanshu Xu, Lu Luo, Limin Gong, Yeman Liu, Zhi Wang and Wei Wang
    Citation: BMC Genomics 2024 25:706
    Content type: Research Published on:

  15. At the 3’ end of the C2 gene in the mammalian TRB locus, a distinct reverse TRBV30 gene (named TRBV31 in mice) has been conserved throughout evolution. In the fully annotated TRB locus of 14 mammals (including...

    Authors: Fengli Wu, Yingjie Wu, Yuanning Yao, Yuanyuan Xu, Qi Peng, Long Ma, Jun Li and Xinsheng Yao
    Citation: BMC Genomics 2024 25:705
    Content type: Research Published on:

  16. The growth, yield, and seed quality of rapeseed are negatively affected by drought stress. Therefore, it is of great value to understand the molecular mechanism behind this phenomenon. In a previous study, lon...

    Authors: Xiaoyu Tan, Weihua Long, Ni Ma, Shifei Sang and Shanya Cai
    Citation: BMC Genomics 2024 25:704
    Content type: Research Published on:

  20. Due to limitations in conventional disease vector control strategies including the rise of insecticide resistance in natural populations of mosquitoes, genetic control strategies using CRISPR gene drive system...

    Authors: Travis C. Collier, Yoosook Lee, Derrick K. Mathias and Víctor López Del Amo
    Citation: BMC Genomics 2024 25:700
    Content type: Research Published on:

  21. Cassava is one of three major potato crops and the sixth most important food crop globally. Improving yield remains a primary aim in cassava breeding. Notably, plant height significantly impacts the yield and ...

    Authors: Zhaoqin Cai, Lixia Ruan, Wanling Wei, Wen He, Haixia Yang, Huixian Chen, Zhenhua Liang, Zhenling Huang, Xiu Lan, Xiufen Zhang, Ruolan Huang, Chunhui Zhao, Tianyuan Li, Longfei He and Hengrui Li
    Citation: BMC Genomics 2024 25:699
    Content type: Research Published on:

  22. Inner Mongolia cashmere goat (IMCG), renowned for its superior cashmere quality, is a Chinese indigenous goat breed that has been developed through natural and artificial selection ov...

    Authors: Ruijun Wang, Xinle Wang, Yunpeng Qi, Yanbo Li, Qin Na, Huiping Yuan, Youjun Rong, Xiaofang Ao, Furong Guo, Lifei Zhang, Yan Liu, Fangzheng Shang, Yanjun Zhang and Yu Wang
    Citation: BMC Genomics 2024 25:698
    Content type: Research Published on:

  23. Real-time quantitative PCR (RT-qPCR) is one of the most widely used gene expression analyses for validating RNA-seq data. This technique requires reference genes that are stable and highly expressed, at least ...

    Authors: Márcio Wilson Dias de Brito, Stephanie Serafim de Carvalho, Maria Beatriz dos Santos Mota and Rafael Dias Mesquita
    Citation: BMC Genomics 2024 25:697
    Content type: Software Published on:

  24. The marbling trait of cattle muscles, being a key indicator, played an important role in evaluating beef quality. Two breeds of cattle, namely a high-marbling (Angus) and a low-marbling (Nanyang) one, with the...

    Authors: Mingyan Shi, Luyao Huang, Shuaitao Meng, Heming Wang, Jinzhou Zhang, Zhiguo Miao and Zhichao Li
    Citation: BMC Genomics 2024 25:696
    Content type: Research Published on:

  25. Effective population size (Ne) is a pivotal parameter in population genetics as it can provide information on the rate of inbreeding and the contemporary status of genetic diversity in breeding populations. The p...

    Authors: Josephine Princy Johnson, Lisa Piche, Hannah Worral, Sikiru Adeniyi Atanda, Clarice J. Coyne, Rebecca J. McGee, Kevin McPhee and Nonoy Bandillo
    Citation: BMC Genomics 2024 25:695
    Content type: Research Published on:

  26. Animals plastically adjust their physiological and behavioural phenotypes to conform to their social environment—social niche conformance. The degree of sexual competition is a critical part of the social envi...

    Authors: Sepand Riyahi, Navina D. Liebermann-Lilie, Arne Jacobs, Peter Korsten, Uwe Mayer and Tim Schmoll
    Citation: BMC Genomics 2024 25:694
    Content type: Research Published on:

  27. ARs plays a crucial role in plant morphogenesis and development. The limited and inefficient rooting of scions poses a significant challenge to the efficiency and quality of clonal propagation of forest trees ...

    Authors: Hao Dou, Jiajia Sun, Tiantian Wang, Shuwen Bi, Xi Feng, Huijuan Sun and Jin’e Quan
    Citation: BMC Genomics 2024 25:693
    Content type: Research Published on:

  28. Cable bacteria are filamentous members of the Desulfobulbaceae family that are capable of performing centimetre‑scale electron transport in marine and freshwater sediments. This long‑distance electron transport i...

    Authors: Anwar Hiralal, Jeanine S. Geelhoed, Sinje Neukirchen and Filip J. R. Meysman
    Citation: BMC Genomics 2024 25:692
    Content type: Research Published on:

  29. Muskoxen are important ecosystem components and provide food, economic opportunities, and cultural well-being for Indigenous communities in the Canadian Arctic. Between 2010 and 2021, Erysipelothrix rhusiopathiae

    Authors: Lakshmi Vineesha Seru, Taya L. Forde, Amélie Roberto-Charron, Fabien Mavrot, Yan D. Niu and Susan J. Kutz
    Citation: BMC Genomics 2024 25:691
    Content type: Research Published on:

  31. The holothurians, commonly known as sea cucumbers, are marine organisms that possess significant dietary, nutritional, and medicinal value. However, the National Center for Biotechnology Information (NCBI) cur...

    Authors: Yingying He, Hancheng Zhao, Yongxin Wang, Changfeng Qu, Xiangxing Gao and Jinlai Miao
    Citation: BMC Genomics 2024 25:689
    Content type: Research Published on:

  32. The co-occurrence of C4 and CAM photosynthesis in a single species seems to be unusual and rare. This is likely due to the difficulty in effectively co-regulating both pathways. Here, we conducted a comparative t...

    Authors: Christian Siadjeu and Gudrun Kadereit
    Citation: BMC Genomics 2024 25:688
    Content type: Research Published on:

  33. Transposable elements (TEs) are DNA sequences that can move or replicate within a genome, and their study has become increasingly important in understanding genome evolution and function. The Tridactylidae fam...

    Authors: Hashim Khan, Huang Yuan, Xuanzeng Liu, Yimeng Nie and Muhammad Majid
    Citation: BMC Genomics 2024 25:687
    Content type: Research Published on:

  34. Cold stress poses a significant threat to the quality and productivity of lychee (Litchi chinensis Sonn.). While previous research has extensively explored the genomic and transcriptomic responses to cold stress ...

    Authors: Mingming Chen, Shuangfeng Dai, Daming Chen, Haomin Chen, Naijie Feng and Dianfeng Zheng
    Citation: BMC Genomics 2024 25:686
    Content type: Research Published on:

  35. Cis-regulatory mutations often underlie phenotypic evolution. However, because identifying the locations of promoters and enhancers in non-coding regions is challenging, we have fewer examples of identified causa...

    Authors: Genta Okude, Yo Y. Yamasaki, Atsushi Toyoda, Seiichi Mori and Jun Kitano
    Citation: BMC Genomics 2024 25:685
    Content type: Research Published on:

  36. Integration of high throughput DNA genotyping and RNA-sequencing data enables the discovery of genomic regions that regulate gene expression, known as expression quantitative trait loci (eQTL). In pigs, effort...

    Authors: Samin Farhangi, Marta Gòdia, Martijn F.L. Derks, Barbara Harlizius, Bert Dibbits, Rayner González-Prendes, Richard P.M.A. Crooijmans, Ole Madsen and Martien A.M. Groenen
    Citation: BMC Genomics 2024 25:684
    Content type: Research Published on:

  37. The escalating impacts of global warming intensify the detrimental effects of heat stress on crop growth and yield. Among the earliest and most vulnerable sites of damage is Photosystem II (PSII). Plants expos...

    Authors: Guangyang Wang, Xiulei Wang, Dongli Li, Xuehe Yang, Tao Hu and Jinmin Fu
    Citation: BMC Genomics 2024 25:683
    Content type: Research Published on:

  38. Green foxtail [Setaria viridis (L.)] is one of the most abundant and troublesome annual grass weeds in alfalfa fields in Northeast China. Synthetic auxin herbicide is widely used in agriculture, while how auxin h...

    Authors: Wangdan Xiong, Xinfeng Jia, Qixin Wang, Nina Zhong, Hanchi Gao, Lingxin Zhang and Juan Sun
    Citation: BMC Genomics 2024 25:682
    Content type: Research Published on:

  39. Analyzing the genetic diversity and selection characteristics of sheep (Ovis aries) holds significant value in understanding their environmental adaptability, enhancing breeding efficiency, and achieving effec...

    Authors: Zhi-peng Han, Rui-zhi Yang, Wen Zhou, Lu-lu Zhang, Jie-ru Wang, Chun-jie Liu and Shu-dong Liu
    Citation: BMC Genomics 2024 25:681
    Content type: Research Published on:

  40. The breeder rooster has played a pivotal role in poultry production by providing high-quality semen. Typically, fertility peaks between 30 and 40 weeks of age and then declines rapidly from 45 to 55 weeks of a...

    Authors: Wenjie Liang, Yuehua He, Tingqi Zhu, Binbin Zhang, Shuangxing Liu, Haishan Guo, Pingquan Liu, Huayuan Liu, Donghua Li, Xiangtao Kang, Wenting Li and Guirong Sun
    Citation: BMC Genomics 2024 25:680
    Content type: Research Published on:

  41. Oxford Nanopore provides high throughput sequencing platforms able to reconstruct complete bacterial genomes with 99.95% accuracy. However, even small levels of error can obscure the phylogenetic relationships...

    Authors: Tu Luan, Seth Commichaux, Maria Hoffmann, Victor Jayeola, Jae Hee Jang, Mihai Pop, Hugh Rand and Yan Luo
    Citation: BMC Genomics 2024 25:679
    Content type: Research Published on:

  42. The piRNA pathway in animal gonads functions as an ‘RNA-based immune system’, serving to silence transposable elements and prevent inheritance of novel invaders. In Drosophila, this pathway relies on three gonad-...

    Authors: David W. J. McQuarrie, Azad Alizada, Benjamin Czech Nicholson and Matthias Soller
    Citation: BMC Genomics 2024 25:678
    Content type: Research Published on:

  43. Sorghum anthracnose is a major disease that hampers the productivity of the crop globally. The disease is caused by the hemibiotrophic fungal pathogen Colletotrichum sublineola. The identification of anthracnose-...

    Authors: Chemeda Birhanu, Gezahegn Girma, Firew Mekbib, Habte Nida, Alemu Tirfessa, Dagnachew Lule, Zelalem Bekeko, Getachew Ayana, Tamirat Bejiga, Gudeta Bedada, Meseret Tola, Tokuma Legesse, Habtamu Alemu, Solomon Admasu, Alemnesh Bekele and Tesfaye Mengiste
    Citation: BMC Genomics 2024 25:677
    Content type: Research Published on:

  44. The precise mechanisms leading to the development of heart failure with preserved ejection fraction (HFpEF) remain incompletely defined. In this study, an integrative approach utilizing untargeted proteomics a...

    Authors: Muyashaer Abudurexiti, Refukaiti Abuduhalike, Tuersunjiang Naman, Nuerdun Wupuer, Dongqin Duan, Mayire Keranmu and Ailiman Mahemuti
    Citation: BMC Genomics 2024 25:676
    Content type: Research Published on:

  45. The number of spikelets per spike is a key trait that affects the yield of bread wheat (Triticum aestivum L.). Identification of the QTL for spikelets per spike and its genetic effects that could be used in molec...

    Authors: Zhiqiang Wang, Haojie Li, Xinjian Zhou, Yuzhou Mou, Ying Zhang, Lang Yu, Xudong Chen, Fangkun Wu, Hong Zhou, Yu Lin, Caixia Li and Yaxi Liu
    Citation: BMC Genomics 2024 25:675
    Content type: Research Published on:

  46. Sponges (phylum Porifera) constantly interact with microbes. They graze on microbes from the water column by filter-feeding and they harbor symbiotic partners within their bodies. In experimental setups, spong...

    Authors: Angela Maria Marulanda-Gomez, Marta Ribes, Sören Franzenburg, Ute Hentschel and Lucia Pita
    Citation: BMC Genomics 2024 25:674
    Content type: Research Published on:

  47. Culex tritaeniorhynchus is widely distributed in China, from Hainan Island in the south to Heilongjiang in the north, covering tropical, subtropical, and temperate climate zones. Culex tritaeniorhynchus carries 1...

    Authors: Ye Zhang, Haifang Wang, Jun Du, Yandong Wang, Chuanhui Zang, Peng Cheng, Lijuan Liu, Chongxing Zhang, Ziwei Lou, Jingjing Lei, Jiahui Wu, Maoqing Gong and Hongmei Liu
    Citation: BMC Genomics 2024 25:673
    Content type: Research Published on:

  48. The scarcity of freshwater resources resulting in a significant yield loss presents a pressing challenge in agriculture. To address this issue, utilizing abundantly available saline water could offer a smart s...

    Authors: Amal Khalaf Alghamdi, Sabiha Parween, Heribert Hirt and Maged M. Saad
    Citation: BMC Genomics 2024 25:672
    Content type: Research Published on:

  49. The dirigent (DIR) genes encode proteins that act as crucial regulators of plant lignin biosynthesis. In Solanaceae species, members of the DIR gene family are intricately related to plant growth and development,...

    Authors: Tong Li, Wenbin Luo, Chaofan Du, Xiaolu Lin, Guojian Lin, Rui Chen, Huaqin He, Ruiqi Wang, Libin Lu and Xiaofang Xie
    Citation: BMC Genomics 2024 25:671
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2024 25:768

  50. The TCP (teosinte branched1/cincinnata/proliferating cell factor) family plays a prominent role in plant development and stress responses. However, TCP family genes have thus far not been identified in castor bea...

    Authors: Yanxiao Li, Xingyang Liu, Xingyuan Xu, Guishuang Zhu, Dianjun Xiang and Peng Liu
    Citation: BMC Genomics 2024 25:670
    Content type: Research Published on:

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BMC Genomics

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