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  1. Drought stress is a prevalent abiotic stress that significantly hinders the growth and development of plants. According to studies, β-aminobutyric acid (BABA) can influence the ABA pathway through the AtIBI1 rece...

    Authors: Cong-Hua Feng, Meng-Xue Niu, Shilei Zhao, Shangjing Guo, Weilun Yin, Xinli Xia and Yanyan Su
    Citation: BMC Genomics 2023 24:473
  2. Protists of the family Trypanosomatidae (phylum Euglenozoa) have gained notoriety as parasites affecting humans, domestic animals, and agricultural plants. However, the true extent of the group's diversity spr...

    Authors: Amanda T. S. Albanaz, Mark Carrington, Alexander O. Frolov, Anna I. Ganyukova, Evgeny S. Gerasimov, Alexei Y. Kostygov, Julius Lukeš, Marina N. Malysheva, Jan Votýpka, Alexandra Zakharova, Kristína Záhonová, Sara L. Zimmer, Vyacheslav Yurchenko and Anzhelika Butenko
    Citation: BMC Genomics 2023 24:471
  3. Alpaca (Vicugna pacos), llama (Lama glama), vicugna (Vicugna vicugna) and guanaco (Lama guanicoe), are the camelid species distributed over the Andean high-altitude grasslands, the Altiplano, and the Patagonian a...

    Authors: Stefano Pallotti, Matteo Picciolini, Marco Antonini, Carlo Renieri and Valerio Napolioni
    Citation: BMC Genomics 2023 24:470
  4. Phloem protein 2 (PP2) proteins play a vital role in the Phloem-based defense (PBD) and participate in many abiotic and biotic stress. However, research on PP2 proteins in cotton is still lacking.

    Authors: Fei Wei, Pengyun Chen, Hongliang Jian, Xiaohao Guo, Xiaoyan Lv, Boying Lian, Mengxi Sun, Li An, Xinyu Dang, Miaoqian Yang, Hongmei Wu, Nan Zhang, Aimin Wu, Hantao Wang, Liang Ma, Xiaokang Fu…
    Citation: BMC Genomics 2023 24:467
  5. Plants possess mitochondrial genomes that are large and complex compared to animals. Despite their size, plant mitochondrial genomes do not contain significantly more genes than their animal counterparts. Stud...

    Authors: Jiaxing Li, Yinglong Chen, Yaling Liu, Chen Wang, Ling Li and Yuehui Chao
    Citation: BMC Genomics 2023 24:466
  6. Isatis tinctoria Linnaeus and Isatis indigotica Fortune are very inconsistent in their morphological characteristics, but the Flora of China treats them as the same species. In this work, a new technology that di...

    Authors: Yong Su, Man Zhang, Qiaosheng Guo, Min Wei, Hongzhuan Shi, Tao Wang, Zhengzhou Han, Huihui Liu, Chang Liu and Jianmin Huang
    Citation: BMC Genomics 2023 24:465
  7. Folic acid is a water-soluble B vitamin (B9), which is closely related to the body’s immune and other metabolic pathways. The folic acid synthesized by rumen microbes has been unable to meet the needs of high-...

    Authors: Xueqin Liu, Siyuan Mi, Wenlong Li, Jinning Zhang, Serafino M. A. Augustino, Zhichao Zhang, Ruiqiang Zhang, Wei Xiao and Ying Yu
    Citation: BMC Genomics 2023 24:464
  8. In breast cancer, as in all cancers, genetic and epigenetic deregulations can result in out-of-context expressions of a set of normally silent tissue-specific genes. The activation of some of these genes in va...

    Authors: Emmanuelle Jacquet, Florent Chuffart, Anne-Laure Vitte, Eleni Nika, Mireille Mousseau, Saadi Khochbin, Sophie Rousseaux and Ekaterina Bourova-Flin
    Citation: BMC Genomics 2023 24:463
  9. Numerous studies in the past have expanded our understanding of the genetic differences of global distributed cyanobacteria that originated around billions of years ago, however, unraveling how gene gain and l...

    Authors: Xian Zhang, Lijun Xiao, Jiahui Liu, Qibai Tian and Jiaqi Xie
    Citation: BMC Genomics 2023 24:462
  10. Approximately 4–8% of the world suffers from a rare disease. Rare diseases are often difficult to diagnose, and many do not have approved therapies. Genetic sequencing has the potential to shorten the current ...

    Authors: Erica L. Lyons, Daniel Watson, Mohammad S. Alodadi, Sharie J. Haugabook, Gregory J. Tawa, Fady Hannah-Shmouni, Forbes D. Porter, Jack R. Collins, Elizabeth A. Ottinger and Uma S. Mudunuri
    Citation: BMC Genomics 2023 24:460
  11. Acute heat stress could induce high mortality and cause huge economic losses in the poultry industry. Although many studies have revealed heat stress-induced injuries of multiple tissues, the main target tissu...

    Authors: Jiuhong Nan, Hongrui Yang, Li Rong, Zijia Jia, Sendong Yang and Shijun Li
    Citation: BMC Genomics 2023 24:459
  12. Hull colour is an important morphological marker for selection in seed production of foxtail millet. However, the molecular mechanisms underlying hull colour variation remain unknown.

    Authors: Shuqing Guo, Shaohua Chai, Yan Guo, Xing Shi, Fei Han, Ting Qu, Lu Xing, Qinghua Yang, Jinfeng Gao, Xiaoli Gao, Baili Feng, Hui Song and Pu Yang
    Citation: BMC Genomics 2023 24:458
  13. Lifespan extension has independently evolved several times during mammalian evolution, leading to the emergence of a group of long-lived animals. Though mammalian/mechanistic target of rapamycin (mTOR) signali...

    Authors: Fei Yang, Xing Liu, Yi Li, Zhenpeng Yu, Xin Huang, Guang Yang and Shixia Xu
    Citation: BMC Genomics 2023 24:456
  14. The 1RS arm of wheat-rye 1BL.1RS translocations contains several subtelomeric tandem repeat families. To study the effect of the difference in the composition of these tandem repeats on the meiotic recombinati...

    Authors: Ziying Xiong, Jie Luo, Yang Zou, Qilin Tang, Shulan Fu and Zongxiang Tang
    Citation: BMC Genomics 2023 24:455
  15. Trichoderma is a diverse genus of fungi that includes several species that possess biotechnological and agricultural applications, including the biocontrol of pathogenic fungi and nematodes. The mitochondrial gen...

    Authors: Zachary Gorman, Jianchi Chen, Adalberto A. Perez de Leon and Christopher Michael Wallis
    Citation: BMC Genomics 2023 24:454
  16. The Pacific oyster, Crassostrea gigas, is an economically important shellfish around the world. Great efforts have been made to improve its growth rate through genetic breeding. However, the candidate marker gene...

    Authors: Yongjing Li, Ben Yang, Chenyu Shi, Ying Tan, Liting Ren, Ahmed Mokrani, Qi Li and Shikai Liu
    Citation: BMC Genomics 2023 24:453
  17. Rheumatoid arthritis (RA) is often accompanied by a common extra-articular manifestation known as RA-related usual interstitial pneumonia (RA-UIP), which is associated with a poor prognosis. However, the mecha...

    Authors: Yulu Qiu, Chang Liu, Yumeng Shi, Nannan Hao, Wenfeng Tan and Fang Wang
    Citation: BMC Genomics 2023 24:450
  18. For Asian seabass (Lates calcarifer, Bloch 1790) cultured at sea cages various aquatic pathogens, complex environmental and stress factors are considered as leading causes of disease, causing tens of millions of ...

    Authors: Xueyan Shen, Yong Chao Niu, Joseph Angelo V. Uichanco, Norman Phua, Pranjali Bhandare, Natascha May Thevasagayam, Sai Rama Sridatta Prakki and László Orbán
    Citation: BMC Genomics 2023 24:449
  19. Lonicera japonica Thunb. is widely used in traditional Chinese medicine. Medicinal L. japonica mainly consists of dried flower buds and partially opened flowers, thus flowers are an important quality indicator. M...

    Authors: Yi Lin, Xiwu Qi, Yan Wan, Zequn Chen, Hailing Fang and Chengyuan Liang
    Citation: BMC Genomics 2023 24:447
  20. Disease molecular complexity requires high throughput workflows to map disease pathways through analysis of vast tissue repositories. Great progress has been made in tissue multiomics analytical technologies. ...

    Authors: Scott A. Schactler, Stephen J. Scheuerman, Andrea Lius, William A. Altemeier, Dowon An, Thomas J. Matula, Michal Mikula, Maria Kulecka, Oleg Denisenko, Daniel Mar and Karol Bomsztyk
    Citation: BMC Genomics 2023 24:446
  21. Single nucleotide polymorphisms (SNPs) and insertions/deletions (InDels) are the most abundant genetic variations and widely distribute across the genomes in plant. Development of SNP and InDel markers is a va...

    Authors: Yadong Li, Xiaobo Luo, Xiao Peng, Yueyue Jin, Huping Tan, Linjun Wu, Jingwei Li, Yun Pei, Xiuhong Xu and Wanping Zhang
    Citation: BMC Genomics 2023 24:445
  22. Long non-coding RNAs (lncRNAs) are defined as transcribed molecules longer than 200 nucleotides with little to no protein-coding potential. LncRNAs can regulate gene expression of nearby genes (cis-acting) or gen...

    Authors: Mariela Tenorio, Joanna Serwatowska, Selene L. Fernandez-Valverde, Katarzyna Oktaba and Diego Cortez
    Citation: BMC Genomics 2023 24:444
  23. Morphological and traditional genetic studies of the young Pliocene genus Hyles have led to the understanding that despite its importance for taxonomy, phenotypic similarity of wing patterns does not correlate wi...

    Authors: Anna K. Hundsdoerfer, Tilman Schell, Franziska Patzold, Charlotte J. Wright, Atsuo Yoshido, František Marec, Hana Daneck, Sylke Winkler, Carola Greve, Lars Podsiadlowski, Michael Hiller and Martin Pippel
    Citation: BMC Genomics 2023 24:443
  24. Expression quantitative trait loci (eQTL) studies provide insights into regulatory mechanisms underlying disease risk. Expanding studies of gene regulation to underexplored populations and to medically relevan...

    Authors: Konstantinos Rouskas, Efthymia A. Katsareli, Charalampia Amerikanou, Alexandros C. Dimopoulos, Stavros Glentis, Alexandra Kalantzi, Anargyros Skoulakis, Nikolaos Panousis, Halit Ongen, Deborah Bielser, Alexandra Planchon, Luciana Romano, Vaggelis Harokopos, Martin Reczko, Panagiotis Moulos, Ioannis Griniatsos…
    Citation: BMC Genomics 2023 24:442
  25. The sugarcane aphid (SCA; Melanaphis sacchari) has emerged as a key pest on sorghum in the United States that feeds from the phloem tissue, drains nutrients, and inflicts physical damage to plants. Previously, it...

    Authors: Heena Puri, Sajjan Grover, Lise Pingault, Scott E. Sattler and Joe Louis
    Citation: BMC Genomics 2023 24:441
  26. Biocontrol is a key technology for the control of pest species. Microctonus parasitoid wasps (Hymenoptera: Braconidae) have been released in Aotearoa New Zealand as biocontrol agents, targeting three different pe...

    Authors: Sarah N. Inwood, John Skelly, Joseph G. Guhlin, Thomas W.R. Harrop, Stephen L. Goldson and Peter K. Dearden
    Citation: BMC Genomics 2023 24:440
  27. Oxford Nanopore Technologies (ONT) offers an accessible platform for long-read sequencing, which improves the reconstruction of genomes and helps to resolve complex genomic contexts, especially in the case of ...

    Authors: Mathieu Gand, Bram Bloemen, Kevin Vanneste, Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker
    Citation: BMC Genomics 2023 24:438
  28. CD-1 is an outbred mouse stock that is frequently used in toxicology, pharmacology, and fundamental biomedical research. Although inbred strains are typically better suited for such studies due to minimal gene...

    Authors: Yoon Hee Jung, Hsiao-Lin V. Wang, Samir Ali, Victor G. Corces and Isaac Kremsky
    Citation: BMC Genomics 2023 24:437
  29. Arthropods are the largest group in the animal kingdom and are morphologically characterized by heterorhythmic segments. Brachyuran decapod crustaceans undergo brachyurization metamorphosis in the early develo...

    Authors: Shasha Chen, Xianfeng Jiang, Longjie Xia, Zhiyi Chen, Kaiya Zhou, Jie Yan and Peng Li
    Citation: BMC Genomics 2023 24:436
  30. Pectate lyase (PL, EC, as an endo-acting depolymerizing enzyme, cleaves α-1,4-glycosidic linkages in esterified pectin and involves a broad range of cell wall modifications. However, the knowledge con...

    Authors: Xiaolong Huang, Guilian Sun, Zongmin Wu, Yu Jiang, Qiaohong Li, Yin Yi and Huiqing Yan
    Citation: BMC Genomics 2023 24:435
  31. Fatty acids composition in poultry muscle is directly related to its tenderness, flavour, and juiciness, whereas its genetic mechanisms have not been elucidated. In this study, the genetic structure and key re...

    Authors: Shengxin Fan, Pengtao Yuan, Shuaihao Li, Hongtai Li, Bin Zhai, Yuanfang Li, Hongyuan Zhang, Jinxin Gu, Hong Li, Yadong Tian, Xiangtao Kang, Yanhua Zhang and Guoxi Li
    Citation: BMC Genomics 2023 24:434
  32. COVID-19 waves caused by specific SARS-CoV-2 variants have occurred globally at different times. We focused on Omicron variants to understand the genomic diversity and phylogenetic relatedness of SARS-CoV-2 st...

    Authors: Ali Raza Bukhari, Javaria Ashraf, Akbar Kanji, Yusra Abdul Rahman, Nídia S. Trovão, Peter M. Thielen, Maliha Yameen, Samiah Kanwar, Waqasuddin Khan, Furqan Kabir, Muhammad Imran Nisar, Brian Merritt, Rumina Hasan, David Spiro, Zeba Rasmussen, Uzma Bashir Aamir…
    Citation: BMC Genomics 2023 24:432
  33. The H9c2 myoblast cell line, isolated from the left ventricular tissue of rat, is currently used in vitro as a mimetic for skeletal and cardiac muscle due to its biochemical, morphological, and electrical/horm...

    Authors: Carlos Campero-Basaldua, Jessica Herrera-Gamboa, Judith Bernal-Ramírez, Silvia Lopez-Moran, Luis-Alberto Luévano-Martínez, Hugo Alves-Figueiredo, Guillermo Guerrero, Gerardo García-Rivas and Víctor Treviño
    Citation: BMC Genomics 2023 24:431
  34. The tumor immune microenvironment (TIME) of colon cancer (CC) has been associated with extensive immune cell infiltration (IMI). Increasing evidence demonstrated that plasma cells (PC) have an extremely import...

    Authors: Qi Zhang, Xiao Feng, Mingming Zhang, Wenjing Sun, Yuqing Zhai, Shuangshuang Qing, Ying Liu, Haoran Zhao, Jing Sun, Yi Zhang and Chaoqun Ma
    Citation: BMC Genomics 2023 24:430
  35. Recent developments in plant genomics have enabled a comprehensive analysis of the medicinal potential of plants based on their gene repertoire. Genes of biosynthesis pathways can be discovered through compara...

    Authors: Christian Siadjeu and Boas Pucker
    Citation: BMC Genomics 2023 24:429
  36. The adaptive evolution of plateau indigenous animals is a current research focus. However, phenotypic adaptation is complex and may involve the interactions between multiple genes or pathways, many of which re...

    Authors: Cuiling Wu, Shengchao Ma, Bingru Zhao, Chongkai Qin, Yujiang Wu, Jiang Di, Langda Suo and Xuefeng Fu
    Citation: BMC Genomics 2023 24:428
  37. The study of the host-microbiome by the collection of non-invasive samples has the potential to become a powerful tool for conservation monitoring and surveillance of wildlife. However, multiple factors can bi...

    Authors: Alejandro Oliveros, Julien Terraube, Alexis L. Levengood, Daniel Powell and Céline H. Frère
    Citation: BMC Genomics 2023 24:427
  38. Comprehensive analysis of multiple data sets can identify potential driver genes for various cancers. In recent years, driver gene discovery based on massive mutation data and gene interaction networks has att...

    Authors: Xin Chu, Boxin Guan, Lingyun Dai, Jin-xing Liu, Feng Li and Junliang Shang
    Citation: BMC Genomics 2023 24:426
  39. Growing evidence indicates that RNA methylation plays a fundamental role in epigenetic regulation, which is associated with the tumorigenesis and drug resistance. Among them, acute myeloid leukemia (AML), as t...

    Authors: Jingyi Han, Qinqin Liu, Yao Zhou, Dong Li and Ran Wang
    Citation: BMC Genomics 2023 24:425
  40. Non-coding RNAs (ncRNAs) draw much attention from studies widely in recent years because they play vital roles in life activities. As a good complement to wet experiment methods, computational prediction metho...

    Authors: Ning Ai, Yong Liang, Haoliang Yuan, Dong Ouyang, Shengli Xie and Xiaoying Liu
    Citation: BMC Genomics 2023 24:424
  41. Long terminal repeat (LTR)-retrotransposons (LTR-RTs) are ubiquitous and make up the majority of nearly all sequenced plant genomes, whereas their pivotal roles in genome evolution, gene expression regulation ...

    Authors: Long-Long Yang, Xin-Yu Zhang, Li-Ying Wang, Yan-Ge Li, Xiao-Ting Li, Yi Yang, Qing Su, Ning Chen, Yu-Lan Zhang, Ning Li, Chuan-Liang Deng, Shu-Fen Li and Wu-Jun Gao
    Citation: BMC Genomics 2023 24:423
  42. Microcephaly is caused by reduced brain volume and most usually associated with a variety of neurodevelopmental disorders (NDDs). To provide an overview of the diagnostic yield of whole exome sequencing (WES) ...

    Authors: Chunli Wang, Wei Zhou, Luyan Zhang, Luhan Fu, Wei Shi, Yan Qing, Fen Lu, Jian Tang, Xiucheng Gao, Aihua Zhang, Zhanjun Jia, Yue Zhang, Xiaoke Zhao and Bixia Zheng
    Citation: BMC Genomics 2023 24:422
  43. Peanut is an economically-important oilseed crop and needs a large amount of calcium for its normal growth and development. Calcium deficiency usually leads to embryo abortion and subsequent abnormal pod devel...

    Authors: Kang Tang, Lin Li, Bowen Zhang, Wei Zhang, Ningbo Zeng, Hao Zhang, Dengwang Liu and Zinan Luo
    Citation: BMC Genomics 2023 24:421

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