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  1. The U-box gene family encodes E3 ubiquitin ligases involved in plant hormone signaling pathways and abiotic stress responses. However, there has yet to be a comprehensive analysis of the U-box gene family in maiz...

    Authors: Yongle Liu, Changgen Li, Aokang Qin, Wenli Deng, Rongrong Chen, Hongyang Yu, Yihua Wang, Jianbo Song and Liming Zeng
    Citation: BMC Genomics 2024 25:132
    Content type: Research Published on:

  2. Exploring the hypoxia adaptation mechanism of Tibetan chicken is of great significance for revealing the survival law of Tibetan chicken and plateau animal husbandry production. To investigate the hypoxia adap...

    Authors: Mingming Xue, Runjie Yu, Lixian Yang, Fuyin Xie, Meiying Fang and Qiguo Tang
    Citation: BMC Genomics 2024 25:131
    Content type: Research Published on:

  3. The NAC TF family is widely involved in plant responses to various types of stress. Red clover (Trifolium pratense) is a high-quality legume, and the study of NAC genes in red clover has not been comprehensive. T...

    Authors: Zicheng Wang, Zirui Chen, Yuchen Wu, Meiqi Mu, Jingwen Jiang, Wanting Nie, Siwen Zhao, Guowen Cui and Xiujie Yin
    Citation: BMC Genomics 2024 25:128
    Content type: Research Published on:

  5. Copy-number variations (CNVs), which refer to deletions and duplications of chromosomal segments, represent a significant source of variation among individuals, contributing to human evolution and being implic...

    Authors: Kun Xie, Xiaojun Ge, Haque A.K. Alvi, Kang Liu, Jianfeng Song and Qiang Yu
    Citation: BMC Genomics 2024 25:126
    Content type: Research Published on:

  6. Diabetic foot ulcer (DFU) is one of the most common and severe complications of diabetes, with vascular changes, neuropathy, and infections being the primary pathological mechanisms. Glutamine (Gln) metabolism...

    Authors: Hongshuo Shi, Xin Yuan, Xiao Yang, Renyan Huang, Weijing Fan and Guobin Liu
    Citation: BMC Genomics 2024 25:125
    Content type: Research Published on:

  7. Single-cell transcriptomics provides means to study cell populations at the level of individual cells. In leukocyte biology this approach could potentially aid the identification of subpopulations and function...

    Authors: Matilda Maxwell, Robert Söderlund, Sonja Härtle and Eva Wattrang
    Citation: BMC Genomics 2024 25:124
    Content type: Research Published on:

  8. Haloxylon ammodendron holds significance as an ecological plant, showcasing remarkable adaptability to desert conditions, halophytic environments, and sand fixation. With its potential for carbon sequestration, i...

    Authors: Lulu Yang, Jia Liu, Wenjun Guo, Zehan Zheng, Yafei Xu, Houjun Xia and Tian Xiao
    Citation: BMC Genomics 2024 25:123
    Content type: Research Published on:

  9. Cancers exhibit complex transcriptomes with aberrant splicing that induces isoform-level differential expression compared to non-diseased tissues. Transcriptomic profiling using short-read sequencing has utili...

    Authors: Saranga Wijeratne, Maria E. Hernandez Gonzalez, Kelli Roach, Katherine E. Miller, Kathleen M. Schieffer, James R. Fitch, Jeffrey Leonard, Peter White, Benjamin J. Kelly, Catherine E. Cottrell, Elaine R. Mardis, Richard K. Wilson and Anthony R. Miller
    Citation: BMC Genomics 2024 25:122
    Content type: Research Published on:

  11. To comprehensively understand the characteristics of the GH3 gene family in tea plants (Camellia sinensis), we identified 17 CsGH3 genes and analyzed their physicochemical properties, phylogenetic relationships, ...

    Authors: Xinge Wang, Chunyu Jia, Lishuang An, Jiangyan Zeng, Aixia Ren, Xin Han, Yiqing Wang and Shuang Wu
    Citation: BMC Genomics 2024 25:120
    Content type: Research Published on:

  12. Organisms from many distinct evolutionary lineages acquired the capacity to enter a dormant state in response to environmental conditions incompatible with maintaining normal life activities. Most studied orga...

    Authors: Tamar Hashimshony, Liron Levin, Andreas C. Fröbius, Nitsan Dahan, Vered Chalifa-Caspi, Reini Hamo, Oshri Gabai-Almog, Idit Blais, Yehuda G. Assaraf and Esther Lubzens
    Citation: BMC Genomics 2024 25:119
    Content type: Research Published on:

  13. Conifers are long-lived and slow-evolving, thus requiring effective defences against their fast-evolving insect natural enemies. The copy number variation (CNV) of two key acetophenone biosynthesis genes Ugt5/Ugt...

    Authors: Tin Hang Hung, Ernest T. Y. Wu, Pauls Zeltiņš, Āris Jansons, Aziz Ullah, Nadir Erbilgin, Joerg Bohlmann, Jean Bousquet, Inanc Birol, Sonya M. Clegg and John J. MacKay
    Citation: BMC Genomics 2024 25:118
    Content type: Research Published on:

  14. In cellular activities, essential proteins play a vital role and are instrumental in comprehending fundamental biological necessities and identifying pathogenic genes. Current deep learning approaches for pred...

    Authors: Chen Ye, Qi Wu, Shuxia Chen, Xuemei Zhang, Wenwen Xu, Yunzhi Wu, Youhua Zhang and Yi Yue
    Citation: BMC Genomics 2024 25:117
    Content type: Research Published on:

  15. Here we describe a new public pharmacogenetic (PGx) annotation database of a large (n = 3,202) and diverse biospecimen collection of 1000 Genomes Project cell lines and DNAs. The database is searchable with a use...

    Authors: N. Gharani, G. Calendo, D. Kusic, J. Madzo and L. Scheinfeldt
    Citation: BMC Genomics 2024 25:116
    Content type: Database Published on:

  16. Short tandem repeats (STRs) are widely distributed across the human genome and are associated with numerous neurological disorders. However, the extent that STRs contribute to disease is likely under-estimated...

    Authors: Jinfeng Lu, Camilo Toro, David R. Adams, Cristiane Araujo Martins Moreno, Wan-Ping Lee, Yuk Yee Leung, Mathew B. Harms, Badri Vardarajan and Erin L. Heinzen
    Citation: BMC Genomics 2024 25:115
    Content type: Software Published on:

  17. Theaceae, comprising 300 + species, holds significance in biodiversity, economics, and culture, notably including the globally consumed tea plant. Stewartia gemmata, a species of the earliest diverging tribe Stew...

    Authors: Daliang Liu, Zhihan Zhang, Yanlin Hao, Mengge Li, Houlin Yu, Xingruo Zhang, Haoyang Mi, Lin Cheng and Yiyong Zhao
    Citation: BMC Genomics 2024 25:114
    Content type: Research Published on:

  18. The corpora allata-corpora cardiaca (CA-CC) is an endocrine gland complex that regulates mosquito development and reproduction through the synthesis of juvenile hormone (JH). Epoxidase (Epox) is a key enzyme in t...

    Authors: Zhi Qi, Kayvan Etebari, Marcela Nouzova, Fernando G. Noriega and Sassan Asgari
    Citation: BMC Genomics 2024 25:113
    Content type: Research Published on:

  19. Auxin transcription factor (ARF) is an important transcription factor that transmits auxin signals and is involved in plant growth and development as well as stress response. However, genome-wide identificatio...

    Authors: Ming-jun Zhang, Ying-yu Xue, Shuang Xu, Xuan-ru Jin and Xing-chu Man
    Citation: BMC Genomics 2024 25:112
    Content type: Research Published on:

  20. Wohlfahrtia magnifica is an obligatory parasite that causes myiasis in several warm-blooded vertebrates. Adult females deposit the first-stage larvae directly onto wounds or natural body orifices (e.g., genitalia...

    Authors: Zhipeng Jia, Surong Hasi, Deng Zhan, Claus Vogl and Pamela A. Burger
    Citation: BMC Genomics 2024 25:111
    Content type: Research Published on:

  21. B-box (BBX) family is a class of zinc finger transcription factors (TFs) that play essential roles in regulating plant growth, development, as well as abiotic stress. However, no systematic analysis of BBX genes ...

    Authors: Shuxia Li, Shuaiqi Guo, Xueqin Gao, Xiaotong Wang, Yaling Liu, Jing Wang, Xiaohong Li, Jinqing Zhang and Bingzhe Fu
    Citation: BMC Genomics 2024 25:110
    Content type: Research Published on:

  22. Despite the many cheap and fast ways to generate genomic data, good and exact genome assembly is still a problem, with especially the repeats being vastly underrepresented and often misassembled. As short read...

    Authors: Ludwig Mann, Kristin Balasch, Nicola Schmidt and Tony Heitkam
    Citation: BMC Genomics 2024 25:109
    Content type: Software Published on:

  23. Sect. Tuberculata belongs to Camellia, and its members are characterized by a wrinkled pericarp and united filaments. All the plants in this group, which are endemic to China, are highly valuable for exploring th...

    Authors: Zhaohui Ran, Zhi Li, Xu Xiao, Mingtai An and Chao Yan
    Citation: BMC Genomics 2024 25:108
    Content type: Research Published on:

  24. Junipers (Juniperus spp.) are woody native, invasive plants that have caused encroachment problems in the U.S. western rangelands, decreasing forage productivity and biodiversity. A potential solution to this iss...

    Authors: Henrique A. Mulim, John W. Walker, Daniel F. Waldron, Danilo G. Quadros, Lorena F. Benfica, Felipe E. de Carvalho and Luiz F. Brito
    Citation: BMC Genomics 2024 25:107
    Content type: Research Published on:

  25. Camellia sasanqua Thunb. is an essential woody ornamental plant. Our continuous observation found that scale insects often infest C. sasanqua all year round in Kunming, China, resulting in poor growth. Scientific...

    Authors: Hongye Zhang, Xubo Wang, Ziyun Yang, Yan Bai, Longqing Chen and Tian Wu
    Citation: BMC Genomics 2024 25:106
    Content type: Research Published on:

  26. Diabetes cell replacement therapy has the potential to be transformed by human pluripotent stem cell-derived β cells (SC-β cells). However, the precise identity of SC-β cells in relationship to primary fetal a...

    Authors: Mason D. Schmidt, Matthew Ishahak, Punn Augsornworawat and Jeffrey R. Millman
    Citation: BMC Genomics 2024 25:105
    Content type: Research Published on:

  27. White Striping (WS) and Wooden Breast (WB) pectoral myopathies are relevant disorders for contemporary broiler production worldwide. Several studies aimed to elucidate the genetic components associated with th...

    Authors: Mariane Spudeit Dal Pizzol, Adriana Mércia Guaratini Ibelli, Maurício Egídio Cantão, Francelly Geralda Campos, Haniel Cedraz de Oliveira, Jane de Oliveira Peixoto, Lana Teixeira Fernandes, Fernando de Castro Tavernari, Marcos Antônio Zanella Morés, Ana Paula Almeida Bastos and Mônica Corrêa Ledur
    Citation: BMC Genomics 2024 25:104
    Content type: Research Published on:

  28. The Ets domain transcription factors direct diverse biological processes throughout all metazoans and are implicated in development as well as in tumor initiation, progression and metastasis. The Drosophila Ets t...

    Authors: Komal Kumar Bollepogu Raja, Kelvin Yeung, Yoon-Kyung Shim and Graeme Mardon
    Citation: BMC Genomics 2024 25:103
    Content type: Research Published on:

  30. SPL transcription factors play vital roles in regulating plant growth, development, and abiotic stress responses. Sugar beet (Beta vulgaris L.), one of the world’s main sugar-producing crops, is a major source of...

    Authors: Guoxing Xue, Weijiao Wu, Yue Fan, Chao Ma, Ruiqi Xiong, Qing Bai, Xin Yao, Wenfeng Weng, Jianping Cheng and Jingjun Ruan
    Citation: BMC Genomics 2024 25:101
    Content type: Research Published on:

  31. Ovine footrot caused by Dichelobacter nodosus (D. nodosus) is a contagious disease with serious economic and welfare impacts in sheep production systems worldwide. A better understanding of the host genetic archi...

    Authors: Daniel Gaspar, Catarina Ginja, Nuno Carolino, Célia Leão, Helena Monteiro, Lino Tábuas, Sandra Branco, Ludovina Padre, Pedro Caetano, Ricardo Romão, Claudino Matos, António Marcos Ramos, Elisa Bettencourt and Ana Usié
    Citation: BMC Genomics 2024 25:100
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2024 25:241

  32. Heat stress (HS) is an increasing threat for pig production with a wide range of impacts. When submitted to high temperatures, pigs will use a variety of strategies to alleviate the effect of HS. While systemi...

    Authors: Guilhem Huau, Laurence Liaubet, Jean-Luc Gourdine, Juliette Riquet and David Renaudeau
    Citation: BMC Genomics 2024 25:99
    Content type: Research Published on:

  33. Universal stress proteins (USPs) are a class of stress-induced proteins that play a crucial role in biotic and abiotic stress responses. These proteins have previously been reported to participate directly in ...

    Authors: Yunqing Li, Ao Zheng, Zhuang Li, Hu Wang, Jing Wang, Zhanghui Dong, Lina Yao, Xiao Han and Fei Wei
    Citation: BMC Genomics 2024 25:98
    Content type: Research Published on:

  35. Angelica sinensis (Danggui), a renowned medicinal orchid, has gained significant recognition for its therapeutic effects in treating a wide range of ailments. Genome information serves as a valuable resource, ena...

    Authors: Silan Wu, Lingling Da, Qiaoqiao Xiao, Qi Pan, Jinqiang Zhang and Jiaotong Yang
    Citation: BMC Genomics 2024 25:96
    Content type: Database Published on:

  36. Evolutionarily conserved in plants, the enzyme D-myo-inositol-3-phosphate synthase (MIPS; EC 5.5.1.4) regulates the initial, rate-limiting reaction in the phytic acid biosynthetic pathway. They are reported to be...

    Authors: Feba Jacob, Rasmieh Hamid, Zahra Ghorbanzadeh, Ravisankar Valsalan, Lavale Shivaji Ajinath and Deepu Mathew
    Citation: BMC Genomics 2024 25:95
    Content type: Research Published on:

  37. The cuttlefish, Sepia pharaonis, is characterized by rapid growth and strong disease resistance, making it an important commercially farmed cephalopod species in the southeastern coastal regions of China. However...

    Authors: Maowang Jiang, Qingxi Han, Liting Xu, Ruibing Peng, Tao Zhang and Xiamin Jiang
    Citation: BMC Genomics 2024 25:94
    Content type: Research Published on:

  38. Stayability, which may be defined as the probability of a cow remaining in the herd until a reference age or at a specific number of calvings, is usually measured late in the animal’s life. Thus, if used as se...

    Authors: Diogo Osmar Silva, Gerardo Alves Fernandes Júnior, Larissa Fernanda Simielli Fonseca, Lúcio Flávio Macedo Mota, Tiago Bresolin, Roberto Carvalheiro and Lucia Galvão de Albuquerque
    Citation: BMC Genomics 2024 25:93
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2024 25:211

  39. Gorals Naemorhedus resemble both goats and antelopes, which prompts much debate about the intragenus species delimitation and phylogenetic status of the genus Naemorhedus within the subfamily Caprinae. Their evol...

    Authors: Nan Sun, Xiao-Ying Ma, Guang-Hong Shi, Xiao-Hong Yang, Wei Li, Chen-Guang Feng, Da Mi, Guo-Gang Li and Ji-Qi Lu
    Citation: BMC Genomics 2024 25:92
    Content type: Research Published on:

  40. Spodoptera litura is a harmful pest that feeds on more than 80 species of plants, and can be infected and killed by Spodoptera litura nucleopolyhedrovirus (SpltNPV). SpltNPV-C3 is a type C SpltNPV clone, that was...

    Authors: Weisong Gao, Xingjian Liu, Xintao Gao, Tong Wu, Shuang Wei, Zhifang Zhang, Huan Zhang and Yinü Li
    Citation: BMC Genomics 2024 25:91
    Content type: Research Published on:

  41. Hylurgus ligniperda, a major international forestry quarantine pest, was recently found to have invaded and posed a serious threat to the Pinus forests of the Jiaodong Peninsula in China. Continuous monitoring an...

    Authors: Chengjin Li, Buxin Wang, Yingchao Ji, Lan Huang, Xiaoyi Wang, Wenxia Zhao, Yanhong Wang, Hongyi Wang and Yanxia Yao
    Citation: BMC Genomics 2024 25:90
    Content type: Research Published on:

  43. As a key regulatory enzyme in the glycolysis pathway, pyruvate kinase (PK) plays crucial roles in multiple physiological processes during plant growth and is also involved in the abiotic stress response. Howev...

    Authors: Wei Liu, Yubin Wang, Yanwei Zhang, Wei Li, Caijie Wang, Ran Xu, Haiying Dai and Lifeng Zhang
    Citation: BMC Genomics 2024 25:88
    Content type: Research Published on:

  44. Buruli ulcer (BU) disease, caused by Mycobacterium ulcerans (MU), and characterized by necrotic ulcers is still a health problem in Africa and Australia. The genome of the bacterium has several pseudogenes due to...

    Authors: Edwin Sakyi Kyei-Baffour, Kwabena Owusu-Boateng, Abiola Isawumi and Lydia Mosi
    Citation: BMC Genomics 2024 25:87
    Content type: Research Published on:

  45. Comprehensive analysis of multi-omics data is crucial for accurately formulating effective treatment plans for complex diseases. Supervised ensemble methods have gained popularity in recent years for multi-omi...

    Authors: Jiahui Wang, Nanqing Liao, Xiaofei Du, Qingfeng Chen and Bizhong Wei
    Citation: BMC Genomics 2024 25:86
    Content type: Research Published on:

  46. Genomic heterozygosity has been shown to confer a health advantage in humans and play a protective role in complex diseases. Given osteoarthritis (OA) is a highly polygenic disease, we set out to determine if ...

    Authors: Robert Gill, Ming Liu, Guang Sun, Andrew Furey, Tim Spector, Proton Rahman and Guangju Zhai
    Citation: BMC Genomics 2024 25:85
    Content type: Research Published on:

  47. Venoms have evolved independently over a hundred times in the animal kingdom to deter predators and/or subdue prey. Venoms are cocktails of various secreted toxins, whose origin and diversification provide an ...

    Authors: Axel Touchard, Valentine Barassé, Jean-Michel Malgouyre, Michel Treilhou, Christophe Klopp and Elsa Bonnafé
    Citation: BMC Genomics 2024 25:84
    Content type: Research Published on:

  48. Protein phosphatases type 2C (PP2C) are heavily involved in plant growth and development, hormone-related signaling pathways and the response of various biotic and abiotic stresses. However, a comprehensive repor...

    Authors: Pan Zhang, Deqi Liu, Jiawei Ma, Chong Sun, Zhaofei Wang, Yongxing Zhu, Xuemei Zhang and Yiqing Liu
    Citation: BMC Genomics 2024 25:83
    Content type: Research Published on:

  49. Glucosidase II beta subunit (GluIIß), encoded from PRKCSH, is a subunit of the glucosidase II enzyme responsible for quality control of N-linked glycoprotein folding and suppression of GluIIß led to inhibitory ef...

    Authors: Worapong Khaodee, Guo Xiyuan, Moe Thi Thi Han, Chatchai Tayapiwatana, Sawitree Chiampanichayakul, Songyot Anuchapreeda and Ratchada Cressey
    Citation: BMC Genomics 2024 25:82
    Content type: Research Published on:

  50. The expression of biological traits is modulated by genetics as well as the environment, and the level of influence exerted by the latter may vary across characteristics. Photosynthetic traits in plants are co...

    Authors: Huiying Gong, Ziyang Zhou, Chenhao Bu, Deqiang Zhang, Qing Fang, Xiao-Yu Zhang and Yuepeng Song
    Citation: BMC Genomics 2024 25:81
    Content type: Research Published on:

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BMC Genomics

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