Timmons L, Court DL, Fire A: Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans. Gene. 2001, 263: 103-112. 10.1016/S0378-1119(00)00579-5.
Article
CAS
PubMed
Google Scholar
Kamath RS, Ahringer J: Genome-wide RNAi screening in Caenorhabditis elegans. Methods. 2003, 30: 313-321. 10.1016/S1046-2023(03)00050-1.
Article
CAS
PubMed
Google Scholar
Fraser AG, Kamath RS, Zipperlen P, Martinez-Campos M, Sohrmann M, Ahringer J: Functional genomic analysis of C. elegans chromosome I by systematic RNA interference. Nature. 2000, 408: 325-330. 10.1038/35042517.
Article
CAS
PubMed
Google Scholar
Gonczy P, Echeverri C, Oegema K, Coulson A, Jones SJ, Copley RR, Duperon J, Oegema J, Brehm M, Cassin E, et al: Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III. Nature. 2000, 408: 331-336. 10.1038/35042526.
Article
CAS
PubMed
Google Scholar
Maeda I, Kohara Y, Yamamoto M, Sugimoto A: Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi. Curr Biol. 2001, 11: 171-176. 10.1016/S0960-9822(01)00052-5.
Article
CAS
PubMed
Google Scholar
Ashrafi K, Chang FY, Watts JL, Fraser AG, Kamath RS, Ahringer J, Ruvkun G: Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes. Nature. 2003, 421: 268-272. 10.1038/nature01279.
Article
CAS
PubMed
Google Scholar
Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, Gotta M, Kanapin A, Le Bot N, Moreno S, Sohrmann M, et al: Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature. 2003, 421: 231-237. 10.1038/nature01278.
Article
CAS
PubMed
Google Scholar
Simmer F, Moorman C, Linden van der AM, Kuijk E, Berghe van den PV, Kamath RS, Fraser AG, Ahringer J, Plasterk RH: Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions. PLoS Biol. 2003, 1: E12-10.1371/journal.pbio.0000012.
Article
PubMed Central
PubMed
Google Scholar
Vastenhouw NL, Fischer SE, Robert VJ, Thijssen KL, Fraser AG, Kamath RS, Ahringer J, Plasterk RH: A genome-wide screen identifies 27 genes involved in transposon silencing in C. elegans. Curr Biol. 2003, 13: 1311-1316. 10.1016/S0960-9822(03)00539-6.
Article
CAS
PubMed
Google Scholar
Sugimoto A: High-throughput RNAi in Caenorhabditis elegans: genome-wide screens and functional genomics. Differentiation. 2004, 72: 81-91. 10.1111/j.1432-0436.2004.07202004.x.
Article
CAS
PubMed
Google Scholar
Hamilton B, Dong Y, Shindo M, Liu W, Odell I, Ruvkun G, Lee SS: A systematic RNAi screen for longevity genes in C. elegans. Genes Dev. 2005, 19: 1544-1555. 10.1101/gad.1308205.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kim JK, Gabel HW, Kamath RS, Tewari M, Pasquinelli A, Rual JF, Kennedy S, Dybbs M, Bertin N, Kaplan JM, et al: Functional genomic analysis of RNA interference in C. elegans. Science. 2005, 308: 1164-1167. 10.1126/science.1109267.
Article
CAS
PubMed
Google Scholar
Ceron J, Rual JF, Chandra A, Dupuy D, Vidal M, Heuvel van den S: Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity. BMC Dev Biol. 2007, 7: 30-10.1186/1471-213X-7-30.
Article
PubMed Central
PubMed
Google Scholar
Schmitz C, Kinge P, Hutter H: Axon guidance genes identified in a large-scale RNAi screen using the RNAi-hypersensitive Caenorhabditis elegans strain nre-1(hd20) lin-15b(hd126). Proc Natl Acad Sci USA. 2007, 104: 834-839. 10.1073/pnas.0510527104.
Article
PubMed Central
CAS
PubMed
Google Scholar
Servant F, Bru C, Carrere S, Courcelle E, Gouzy J, Peyruc D, Kahn D: ProDom: automated clustering of homologous domains. Brief Bioinform. 2002, 3: 246-251. 10.1093/bib/3.3.246.
Article
CAS
PubMed
Google Scholar
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A: The Pfam protein families database. Nucleic Acids Res. 2008, 36: D281-288. 10.1093/nar/gkm960.
Article
PubMed Central
CAS
PubMed
Google Scholar
Letunic I, Doerks T, Bork P: SMART 6: recent updates and new developments. Nucleic Acids Res. 2009, 37: D229-232. 10.1093/nar/gkn808.
Article
PubMed Central
CAS
PubMed
Google Scholar
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, et al: InterPro: an integrated documentation resource for protein families, domains and functional sites. Brief Bioinform. 2002, 3: 225-235. 10.1093/bib/3.3.225.
Article
CAS
PubMed
Google Scholar
Hunt-Newbury R, Viveiros R, Johnsen R, Mah A, Anastas D, Fang L, Halfnight E, Lee D, Lin J, Lorch A, et al: High-throughput in vivo analysis of gene expression in Caenorhabditis elegans. PLoS Biol. 2007, 5: e237-10.1371/journal.pbio.0050237.
Article
PubMed Central
PubMed
Google Scholar
Lynch AS, Briggs D, Hope IA: Developmental expression pattern screen for genes predicted in the C. elegans genome sequencing project. Nat Genet. 1995, 11: 309-313. 10.1038/ng1195-309.
Article
CAS
PubMed
Google Scholar
McGhee JD, Sleumer MC, Bilenky M, Wong K, McKay SJ, Goszczynski B, Tian H, Krich ND, Khattra J, Holt RA, et al: The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine. Dev Biol. 2007, 302: 627-645. 10.1016/j.ydbio.2006.10.024.
Article
CAS
PubMed
Google Scholar
McGhee JD, Fukushige T, Krause MW, Minnema SE, Goszczynski B, Gaudet J, Kohara Y, Bossinger O, Zhao Y, Khattra J, et al: ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult. Dev Biol. 2009, 327: 551-565. 10.1016/j.ydbio.2008.11.034.
Article
PubMed Central
CAS
PubMed
Google Scholar
Blacque OE, Perens EA, Boroevich KA, Inglis PN, Li C, Warner A, Khattra J, Holt RA, Ou G, Mah AK, et al: Functional genomics of the cilium, a sensory organelle. Curr Biol. 2005, 15: 935-941. 10.1016/j.cub.2005.04.059.
Article
CAS
PubMed
Google Scholar
Etchberger JF, Lorch A, Sleumer MC, Zapf R, Jones SJ, Marra MA, Holt RA, Moerman DG, Hobert O: The molecular signature and cis-regulatory architecture of a C. elegans gustatory neuron. Genes Dev. 2007, 21: 1653-1674. 10.1101/gad.1560107.
Article
PubMed Central
CAS
PubMed
Google Scholar
Jones SJ, Riddle DL, Pouzyrev AT, Velculescu VE, Hillier L, Eddy SR, Stricklin SL, Baillie DL, Waterston R, Marra MA: Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans. Genome Res. 2001, 11: 1346-1352. 10.1101/gr.184401.
Article
CAS
PubMed
Google Scholar
Holt SJ, Riddle DL: SAGE surveys C. elegans carbohydrate metabolism: evidence for an anaerobic shift in the long-lived dauer larva. Mech Ageing Dev. 2003, 124: 779-800. 10.1016/S0047-6374(03)00132-5.
Article
CAS
PubMed
Google Scholar
Stanford Microarray Database. [http://genome-www5.stanford.edu/]
Stuart JM, Segal E, Koller D, Kim SK: A gene-coexpression network for global discovery of conserved genetic modules. Science. 2003, 302: 249-255. 10.1126/science.1087447.
Article
CAS
PubMed
Google Scholar
Owen AB, Stuart J, Mach K, Villeneuve AM, Kim S: A gene recommender algorithm to identify coexpressed genes in C. elegans. Genome Res. 2003, 13: 1828-1837.
PubMed Central
CAS
PubMed
Google Scholar
MultiSAGE C. elegans. [http://tock.bcgsc.bc.ca/cgi-bin/sage190]
Gene Ontology. [http://www.geneontology.org/]
Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, et al: WormBase 2007. Nucleic Acids Res. 2008, 36: D612-617. 10.1093/nar/gkm975.
Article
PubMed Central
CAS
PubMed
Google Scholar
Pfam. [http://pfam.sanger.ac.uk/]
InterPro. [http://www.ebi.ac.uk/interpro/]
PubMed. [http://www.ncbi.nlm.nih.gov/pubmed/]
Wormbase. [http://www.wormbase.org/]
Roy PJ, Stuart JM, Lund J, Kim SK: Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. Nature. 2002, 418: 975-979.
CAS
PubMed
Google Scholar
Reinke V, Gil IS, Ward S, Kazmer K: Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans. Development. 2004, 131: 311-323. 10.1242/dev.00914.
Article
CAS
PubMed
Google Scholar
Pauli F, Liu Y, Kim YA, Chen PJ, Kim SK: Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans. Development. 2006, 133: 287-295. 10.1242/dev.02185.
Article
CAS
PubMed
Google Scholar
Von Stetina SE, Watson JD, Fox RM, Olszewski KL, Spencer WC, Roy PJ, Miller DM: Cell-specific microarray profiling experiments reveal a comprehensive picture of gene expression in the C. elegans nervous system. Genome Biol. 2007, 8: R135-10.1186/gb-2007-8-7-r135.
Article
PubMed Central
PubMed
Google Scholar
Fox RM, Von Stetina SE, Barlow SJ, Shaffer C, Olszewski KL, Moore JH, Dupuy D, Vidal M, Miller DM: A gene expression fingerprint of C. elegans embryonic motor neurons. BMC Genomics. 2005, 6: 42-10.1186/1471-2164-6-42.
Article
PubMed Central
PubMed
Google Scholar
Fox RM, Watson JD, Von Stetina SE, McDermott J, Brodigan TM, Fukushige T, Krause M, Miller DM: The embryonic muscle transcriptome of Caenorhabditis elegans. Genome Biol. 2007, 8: R188-10.1186/gb-2007-8-9-r188.
Article
PubMed Central
PubMed
Google Scholar
Watson JD, Wang S, Von Stetina SE, Spencer WC, Levy S, Dexheimer PJ, Kurn N, Heath JD, Miller DM: Complementary RNA amplification methods enhance microarray identification of transcripts expressed in the C. elegans nervous system. BMC Genomics. 2008, 9: 84-10.1186/1471-2164-9-84.
Article
PubMed Central
PubMed
Google Scholar
ProDom. [http://prodom.prabi.fr/prodom/current/html/home.php]
PROSITE. [http://ca.expasy.org/prosite/]
FlyBase. [http://flybase.org/]
Mouse Genome Informatics. [http://www.informatics.jax.org/]