Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, et al: Initial sequencing and analysis of the human genome. Nature. 2001, 409: 860-921. 10.1038/35057062.
Article
CAS
PubMed
Google Scholar
Prasanth KV, Spector DL: Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. Genes Dev. 2007, 21: 11-42. 10.1101/gad.1484207.
Article
CAS
PubMed
Google Scholar
Bannert N, Kurth R: Retroelements and the human genome: new perspectives on an old relation. Proc Natl Acad Sci USA. 2004, 101 (Suppl 2): 14572-14579. 10.1073/pnas.0404838101.
Article
PubMed Central
CAS
PubMed
Google Scholar
Blaise S, de Parseval N, Benit L, Heidmann T: Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution. Proc Natl Acad Sci USA. 2003, 100: 13013-13018. 10.1073/pnas.2132646100.
Article
PubMed Central
CAS
PubMed
Google Scholar
Blond JL, Lavillette D, Cheynet V, Bouton O, Oriol G, Chapel-Fernandes S, Mandrand B, Mallet F, Cosset FL: An envelope glycoprotein of the human endogenous retrovirus HERV-W is expressed in the human placenta and fuses cells expressing the type D mammalian retrovirus receptor. J Virol. 2000, 74: 3321-3329. 10.1128/JVI.74.7.3321-3329.2000.
Article
PubMed Central
CAS
PubMed
Google Scholar
Costas J: Characterization of the intragenomic spread of the human endogenous retrovirus family HERV-W. Mol Biol Evol. 2002, 19: 526-533.
Article
CAS
PubMed
Google Scholar
Mi S, Lee X, Li X, Veldman GM, Finnerty H, Racie L, LaVallie E, Tang XY, Edouard P, Howes S, et al: Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis. Nature. 2000, 403: 785-789. 10.1038/35001608.
Article
CAS
PubMed
Google Scholar
Pavlicek A, Paces J, Elleder D, Hejnar J: Processed pseudogenes of human endogenous retroviruses generated by LINEs: their integration, stability, and distribution. Genome Res. 2002, 12: 391-399.
Article
PubMed Central
CAS
PubMed
Google Scholar
Villesen P, Aagaard L, Wiuf C, Pedersen FS: Identification of endogenous retroviral reading frames in the human genome. Retrovirology. 2004, 1: 32-10.1186/1742-4690-1-32.
Article
PubMed Central
PubMed
Google Scholar
Laufer G, Mayer J, Mueller BF, Mueller-Lantzsch N, Ruprecht K: Analysis of transcribed human endogenous retrovirus W env loci clarifies the origin of multiple sclerosis-associated retrovirus env sequences. Retrovirology. 2009, 6: 37-10.1186/1742-4690-6-37.
Article
PubMed Central
PubMed
Google Scholar
Dewannieux M, Blaise S, Heidmann T: Identification of a functional envelope protein from the HERV-K family of human endogenous retroviruses. J Virol. 2005, 79: 15573-15577. 10.1128/JVI.79.24.15573-15577.2005.
Article
PubMed Central
CAS
PubMed
Google Scholar
Bjerregaard B, Holck S, Christensen IJ, Larsson LI: Syncytin is involved in breast cancer-endothelial cell fusions. Cell Mol Life Sci. 2006, 63: 1906-1911. 10.1007/s00018-006-6201-9.
Article
CAS
PubMed
Google Scholar
Conrad B, Weissmahr RN, Boni J, Arcari R, Schupbach J, Mach B: A human endogenous retroviral superantigen as candidate autoimmune gene in type I diabetes. Cell. 1997, 90: 303-313. 10.1016/S0092-8674(00)80338-4.
Article
CAS
PubMed
Google Scholar
Frank O, Verbeke C, Schwarz N, Mayer J, Fabarius A, Hehlmann R, Leib-Mosch C, Seifarth W: Variable transcriptional activity of endogenous retroviruses in human breast cancer. J Virol. 2008, 82: 1808-1818. 10.1128/JVI.02115-07.
Article
PubMed Central
CAS
PubMed
Google Scholar
Karlsson H, Bachmann S, Schroder J, McArthur J, Torrey EF, Yolken RH: Retroviral RNA identified in the cerebrospinal fluids and brains of individuals with schizophrenia. Proc Natl Acad Sci USA. 2001, 98: 4634-4639. 10.1073/pnas.061021998.
Article
PubMed Central
CAS
PubMed
Google Scholar
Oluwole SO, Yao Y, Conradi S, Kristensson K, Karlsson H: Elevated levels of transcripts encoding a human retroviral envelope protein (syncytin) in muscles from patients with motor neuron disease. Amyotroph Lateral Scler. 2007, 8: 67-72. 10.1080/17482960600864207.
Article
CAS
PubMed
Google Scholar
Perron H, Garson JA, Bedin F, Beseme F, Paranhos-Baccala G, Komurian-Pradel F, Mallet F, Tuke PW, Voisset C, Blond JL, et al: Molecular identification of a novel retrovirus repeatedly isolated from patients with multiple sclerosis. The Collaborative Research Group on Multiple Sclerosis. Proc Natl Acad Sci USA. 1997, 94: 7583-7588. 10.1073/pnas.94.14.7583.
Article
PubMed Central
CAS
PubMed
Google Scholar
Yi JM, Kim HM, Kim HS: Expression of the human endogenous retrovirus HERV-W family in various human tissues and cancer cells. J Gen Virol. 2004, 85: 1203-1210. 10.1099/vir.0.79791-0.
Article
CAS
PubMed
Google Scholar
Flockerzi A, Ruggieri A, Frank O, Sauter M, Maldener E, Kopper B, Wullich B, Seifarth W, Muller-Lantzsch N, Leib-Mosch C, et al: Expression patterns of transcribed human endogenous retrovirus HERV-K(HML-2) loci in human tissues and the need for a HERV Transcriptome Project. BMC Genomics. 2008, 9: 354-10.1186/1471-2164-9-354.
Article
PubMed Central
PubMed
Google Scholar
Buzdin A, Kovalskaya-Alexandrova E, Gogvadze E, Sverdlov E: At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription. J Virol. 2006, 80: 10752-10762. 10.1128/JVI.00871-06.
Article
PubMed Central
CAS
PubMed
Google Scholar
Forsman A, Yun Z, Hu L, Uzhameckis D, Jern P, Blomberg J: Development of broadly targeted human endogenous gammaretroviral pol-based real time PCRs Quantitation of RNA expression in human tissues. J Virol Methods. 2005, 129: 16-30. 10.1016/j.jviromet.2005.04.016.
Article
CAS
PubMed
Google Scholar
Pichon JP, Bonnaud B, Cleuziat P, Mallet F: Multiplex degenerate PCR coupled with an oligo sorbent array for human endogenous retrovirus expression profiling. Nucleic Acids Res. 2006, 34: e46-10.1093/nar/gkl086.
Article
PubMed Central
PubMed
Google Scholar
Seifarth W, Frank O, Zeilfelder U, Spiess B, Greenwood AD, Hehlmann R, Leib-Mosch C: Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray. J Virol. 2005, 79: 341-352. 10.1128/JVI.79.1.341-352.2005.
Article
PubMed Central
CAS
PubMed
Google Scholar
Schon U, Seifarth W, Baust C, Hohenadl C, Erfle V, Leib-Mosch C: Cell type-specific expression and promoter activity of human endogenous retroviral long terminal repeats. Virology. 2001, 279: 280-291. 10.1006/viro.2000.0712.
Article
CAS
PubMed
Google Scholar
Yao Y, Nellaker C, Karlsson H: Evaluation of minor groove binding probe and Taqman probe PCR assays: Influence of mismatches and template complexity on quantification. Mol Cell Probes. 2006, 20: 311-316.
Article
CAS
PubMed
Google Scholar
Tristem M: Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database. J Virol. 2000, 74: 3715-3730. 10.1128/JVI.74.8.3715-3730.2000.
Article
PubMed Central
CAS
PubMed
Google Scholar
Nellaker C, Yao Y, Jones-Brando L, Mallet F, Yolken RH, Karlsson H: Transactivation of elements in the human endogenous retrovirus W family by viral infection. Retrovirology. 2006, 3: 44-10.1186/1742-4690-3-44.
Article
PubMed Central
PubMed
Google Scholar
Yao Y, Schröder J, Nellåker C, Bottmer C, Bachmann S, Yolken RH, Karlsson H: Elevated levels of human endogenous retrovirus-W transcripts in blood cells from patients with first episode schizophrenia. Genes Brain Behav. 2007, 7: 103-112.
PubMed
Google Scholar
Nellaker C, Wallgren U, Karlsson H: Molecular beacon-based temperature control and automated analyses for improved resolution of melting temperature analysis using SYBR I green chemistry. Clin Chem. 2007, 53: 98-103. 10.1373/clinchem.2006.075184.
Article
PubMed
Google Scholar
Nellaker C, Uhrzander F, Tyrcha J, Karlsson H: Mixture models for analysis of melting temperature data. BMC Bioinformatics. 2008, 9: 370-10.1186/1471-2105-9-370.
Article
PubMed Central
PubMed
Google Scholar
Shyamsundar R, Kim YH, Higgins JP, Montgomery K, Jorden M, Sethuraman A, Rijn van de M, Botstein D, Brown PO, Pollack JR: A DNA microarray survey of gene expression in normal human tissues. Genome Biol. 2005, 6: R22-10.1186/gb-2005-6-3-r22.
Article
PubMed Central
PubMed
Google Scholar
Son CG, Bilke S, Davis S, Greer BT, Wei JS, Whiteford CC, Chen QR, Cenacchi N, Khan J: Database of mRNA gene expression profiles of multiple human organs. Genome Res. 2005, 15: 443-450. 10.1101/gr.3124505.
Article
PubMed Central
CAS
PubMed
Google Scholar
Khaitovich P, Kelso J, Franz H, Visagie J, Giger T, Joerchel S, Petzold E, Green RE, Lachmann M, Paabo S: Functionality of intergenic transcription: an evolutionary comparison. PLoS Genet. 2006, 2: e171-10.1371/journal.pgen.0020171.
Article
PubMed Central
PubMed
Google Scholar
Roth RB, Hevezi P, Lee J, Willhite D, Lechner SM, Foster AC, Zlotnik A: Gene expression analyses reveal molecular relationships among 20 regions of the human CNS. Neurogenetics. 2006, 7: 67-80. 10.1007/s10048-006-0032-6.
Article
CAS
PubMed
Google Scholar
Whitney AR, Diehn M, Popper SJ, Alizadeh AA, Boldrick JC, Relman DA, Brown PO: Individuality and variation in gene expression patterns in human blood. Proc Natl Acad Sci USA. 2003, 100: 1896-1901. 10.1073/pnas.252784499.
Article
PubMed Central
CAS
PubMed
Google Scholar
Franz H, Ullmann C, Becker A, Ryan M, Bahn S, Arendt T, Simon M, Paabo S, Khaitovich P: Systematic analysis of gene expression in human brains before and after death. Genome Biol. 2005, 6: R112-10.1186/gb-2005-6-13-r112.
Article
PubMed Central
PubMed
Google Scholar
Reiss D, Zhang Y, Mager DL: Widely variable endogenous retroviral methylation levels in human placenta. Nucleic Acids Res. 2007, 35: 4743-4754. 10.1093/nar/gkm455.
Article
PubMed Central
CAS
PubMed
Google Scholar
Conley AB, Piriyapongsa J, Jordan IK: Retroviral promoters in the human genome. Bioinformatics. 2008, 24: 1563-1567. 10.1093/bioinformatics/btn243.
Article
CAS
PubMed
Google Scholar
Gogvadze E, Stukacheva E, Buzdin A, Sverdlov E: Human-specific modulation of transcriptional activity provided by endogenous retroviral insertions. J Virol. 2009, 83: 6098-6105. 10.1128/JVI.00123-09.
Article
PubMed Central
CAS
PubMed
Google Scholar
Felsenstein J: PHYLIP (Phylogeny Inference Package). Phylogeny Inference Package. Edited by: Felsenstein J. 2005, Seattle: Phylogeny Inference Package, 3.6
Google Scholar