Table 3 Prediction of unmethylated regions (Bird's islands, N = 17,383).
From: Prediction of CpG-island function: CpG clustering vs. sliding-window methods
Method | Number of predicted islands | Number of islands overlapping a Bird's island | Number of Bird's islands 'touched' by the prediction | SN | PPV |
|---|---|---|---|---|---|
TJ | 37,293 | 14,315 | 14,942 | 0.854 | 0.384 |
UCSC | 27,639 | 13,858 | 14,256 | 0.816 | 0.501 |
CpGproD | 76,886 | 14,250 | 15,346 | 0.875 | 0.185 |
CpGcluster: | |||||
   relaxed set* | 198,702 | 29,235 | 15,497 | 0.939 | 0.147 |
   strict set** | 25,454 | 14,809 | 12,623 | 0.757 | 0.582 |