Table 4 Prediction of unmethylated regions (Weber's regions, N = 13,277).
From: Prediction of CpG-island function: CpG clustering vs. sliding-window methods
Method | Number of predicted islands | Number of islands overlapping a Weber's region | Number of Weber's regions 'touched' by the prediction | SN | PPV |
|---|---|---|---|---|---|
TJ | 37,293 | 10,179 | 9,965 | 0.755 | 0.273 |
UCSC | 27,639 | 9,788 | 9,552 | 0.724 | 0.354 |
CpGproD | 76,886 | 10,320 | 10,257 | 0.774 | 0.134 |
CpGcluster: | Â | Â | Â | Â | Â |
   relaxed set* | 198,702 | 18,967 | 10,372 | 0.867 | 0.095 |
   strict set** | 25,454 | 9,633 | 8,378 | 0.663 | 0.378 |