Fan JB, Chee MS, Gunderson KL: Highly parallel genomic assays. Nat Rev Genet. 2006, 7 (8): 632-644. 10.1038/nrg1901.
Article
CAS
PubMed
Google Scholar
Marth GT, Korf I, Yandell MD, Yeh RT, Gu Z, Zakeri H, Stitziel NO, Hillier L, Kwok PY, Gish WR: A general approach to single-nucleotide polymorphism discovery. Nat Genet. 1999, 23 (4): 452-456. 10.1038/70570.
Article
CAS
PubMed
Google Scholar
Picoult-Newberg L, Ideker TE, Pohl MG, Taylor SL, Donaldson MA, Nickerson DA, Boyce-Jacino M: Mining SNPs from EST databases. Genome Res. 1999, 9 (2): 167-174.
CAS
PubMed Central
PubMed
Google Scholar
Rostoks N, Mudie S, Cardle L, Russell J, Ramsay L, Booth A, Svensson JT, Wanamaker SI, Walia H, Rodriguez EM: Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Mol Genet Genomics. 2005, 274 (5): 515-527. 10.1007/s00438-005-0046-z.
Article
CAS
PubMed
Google Scholar
Zhu YL, Song QJ, Hyten DL, Van Tassell CP, Matukumalli LK, Grimm DR, Hyatt SM, Fickus EW, Young ND, Cregan PB: Single-nucleotide polymorphisms in soybean. Genetics. 2003, 163 (3): 1123-1134.
CAS
PubMed Central
PubMed
Google Scholar
Hyten DL, Cannon SB, Song Q, Weeks N, Fickus EW, Shoemaker RC, Specht JE, Farmer AD, May GD, Cregan PB: High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics. 2010, 11 (1): 38-10.1186/1471-2164-11-38.
Article
PubMed Central
PubMed
Google Scholar
Van Tassell CP, Smith TP, Matukumalli LK, Taylor JF, Schnabel RD, Lawley CT, Haudenschild CD, Moore SS, Warren WC, Sonstegard TS: SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nat Methods. 2008, 5 (3): 247-252. 10.1038/nmeth.1185.
Article
CAS
PubMed
Google Scholar
Gaitán-Solís E, Choi IY, Quigley C, Cregan P, Tohme J: Single Nucleotide Polymorphisms in Common Bean: Their Discovery and Genotyping Using a Multiplex Detection System. The Plant Genome. 2008, 1 (2): 125-134. 10.3835/plantgenome2008.04.0204.
Article
Google Scholar
Ramírez M, Graham MA, Blanco-López L, Silvente S, Medrano-Soto A, Blair MW, Hernández G, Vance CP, Lara M: Sequencing and Analysis of Common Bean ESTs. Building a Foundation for Functional Genomics. Plant Physiol. 2005, 137: 1211-1227. 10.1104/pp.104.054999.
Article
PubMed Central
PubMed
Google Scholar
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z: Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005, 437 (7057): 376-380.
CAS
PubMed Central
PubMed
Google Scholar
Maughan PJ, Yourstone SM, Jellen EN, Udall JA: SNP discovery via genomic reduction, barcoding, and 454-pyroseqeuncing in Amaranth. The Plant Genome. 2009, 2 (3): 260-270. 10.3835/plantgenome2009.08.0022.
Article
CAS
Google Scholar
Bennett MD, Leitch IJ: Nuclear DNA amounts in angiosperms. Ann bot. 1995, 76 (2): 113-176. 10.1006/anbo.1995.1085.
Article
CAS
Google Scholar
Barbazuk WB, Scott JE, Hsin DC, Li L, Patrick SS: SNP discovery via 454 transcriptome sequencing. The Plant Journal. 2007, 51 (5): 910-918. 10.1111/j.1365-313X.2007.03193.x.
Article
CAS
PubMed Central
PubMed
Google Scholar
Hyten DL, Choi I-Y, Song Q, Specht JE, Carter TE, Shoemaker RC, Hwang E-Y, Matukumalli LK, Cregan PB: A high density integrated genetic linkage map of soybean and the development of a 1,536 Universal Soy Linkage Panel for QTL mapping. Crop Sci. 2010, 960-968. 10.2135/cropsci2009.06.0360.
Google Scholar
Lee SH, Walker DR, Cregan PB, Boerma HR: Comparison of four flow cytometric SNP detection assays and their use in plant improvement. Theor appl genet. 2004, 110 (1): 167-174. 10.1007/s00122-004-1827-1.
Article
CAS
PubMed
Google Scholar
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J: Genome sequence of the palaeopolyploid soybean. Nature. 2010, 463: 178-183. 10.1038/nature08670.
Article
CAS
PubMed
Google Scholar
Fonseca A, Ferreira J, Dos Santos TR, Mosiolek M, Bellucci E, Kami J, Gepts P, Geffroy V, Schweizer D, Dos Santos KG: Cytogenetic map of common bean (Phaseolus vulgaris L.). Chromosome Res. 2010
Google Scholar
Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S: Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics. 2009, 10: 582-10.1186/1471-2164-10-582.
Article
PubMed Central
PubMed
Google Scholar
Barbazuk WB, Emrich SJ, Chen HD, Li L, Schnable PS: SNP discovery via 454 transcriptome sequencing. Plant J. 2007, 51 (5): 910-918. 10.1111/j.1365-313X.2007.03193.x.
Article
CAS
PubMed Central
PubMed
Google Scholar
Novaes E, Drost D, Farmerie W, Pappas G, Grattapaglia D, Sederoff R, Kirst M: High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC Genomics. 2008, 9 (1): 312-10.1186/1471-2164-9-312.
Article
PubMed Central
PubMed
Google Scholar
Fu Y, Springer NM, Gerhardt DJ, Ying K, Yeh CT, Wu W, Swanson-Wagner R, D'Ascenzo M, Millard T, Freeberg L: Repeat subtraction-mediated sequence capture from a complex genome. Plant J. 2010, 62 (5): 898-909. 10.1111/j.1365-313X.2010.04196.x.
Article
CAS
PubMed
Google Scholar
Choi I-Y, Hyten DL, Matukumalli LK, Song Q, Chaky JM, Quigley CV, Chase K, Lark KG, Reiter RS, Yoon M-S: A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics. 2007, 176 (1): 685-696. 10.1534/genetics.107.070821.
Article
CAS
PubMed Central
PubMed
Google Scholar
Keim P, Olson TC, Shoemaker RC: A rapid protocol for isolating soybean DNA. Soybean Genet Newsl. 1988, 15: 150-152.
Google Scholar
Rozen S, Skaletsky H: Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol. 2000, 132: 365-386.
CAS
PubMed
Google Scholar
Schuler GD: Sequence mapping by electronic PCR. Genome Res. 1997, 7 (5): 541-550.
CAS
PubMed Central
PubMed
Google Scholar
SAS Institute: 2003, SAS In., Version 9.1th edn. Cary, NC: SAS Institute, Inc
Hyten DL, Song Q, Choi IY, Yoon MS, Specht JE, Matukumalli LK, Nelson RL, Shoemaker RC, Young ND, Cregan PB: High-throughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor appl genet. 2008, 116 (7): 945-952. 10.1007/s00122-008-0726-2.
Article
CAS
PubMed
Google Scholar
Fan JB, Oliphant A, Shen R, Kermani BG, Garcia F, Gunderson KL, Hansen M, Steemers F, Butler SL, Deloukas P: Highly parallel SNP genotyping. Cold Spring Harb Symp Quant Biol. 2003, 68: 69-78. 10.1101/sqb.2003.68.69.
Article
CAS
PubMed
Google Scholar