Lucchesi JC, Kelly WG, Panning B: Chromatin remodeling in dosage compensation. Annu Rev Genet. 2005, 39: 615-651. 10.1146/annurev.genet.39.073003.094210.
Article
CAS
PubMed
Google Scholar
Vicoso B, Charlesworth B: Evolution on the X chromosome: unusual patterns and processes. Nat Rev Genet. 2006, 7: 645-653. 10.1038/nrg1914.
Article
CAS
PubMed
Google Scholar
Muller HJ, Kaplan WD: The dosage compensation of Drosophila and mammals as showing the accuracy of the normal type. Genet Res. 1966, 8: 41-59. 10.1017/S0016672300009903.
Article
CAS
PubMed
Google Scholar
Gupta V, Parisi M, Sturgill D, Nuttall R, Doctolero M, Dudko OK, Malley JD, Eastman PS, Oliver B: Global analysis of X-chromosome dosage compensation. J Biol. 2006, 5: 3-10.1186/jbiol30.
Article
PubMed Central
PubMed
Google Scholar
Lucchesi JC: Dosage compensation in Drosophila. Isozymes Curr Top Biol Med Res. 1983, 9: 179-188.
CAS
PubMed
Google Scholar
Charlesworth B: The evolution of chromosomal sex determination and dosage compensation. Curr Biol. 1996, 6: 149-162. 10.1016/S0960-9822(02)00448-7.
Article
CAS
PubMed
Google Scholar
Lande R: Sexual Dimorphism, Sexual Selection, and Adaptation in Polygenic Characters. Evolution. 1980, 34: 292-305. 10.2307/2407393.
Article
Google Scholar
Bhadra U, Pal-Bhadra M, Birchler JA: Role of the male specific lethal (msl) genes in modifying the effects of sex chromosomal dosage in Drosophila. Genetics. 1999, 152: 249-268.
CAS
PubMed Central
PubMed
Google Scholar
Sturgill D, Zhang Y, Parisi M, Oliver B: Demasculinization of X chromosomes in the Drosophila genus. Nature. 2007, 450: 238-241. 10.1038/nature06330.
Article
CAS
PubMed Central
PubMed
Google Scholar
Straub T, Becker PB: Dosage compensation: the beginning and end of generalization. Nat Rev Genet. 2007, 8: 47-57. 10.1038/nrg2013.
Article
CAS
PubMed
Google Scholar
Zhang Y, Oliver B: Dosage compensation goes global. Curr Opin Genet Dev. 2007, 17: 113-120. 10.1016/j.gde.2007.02.002.
Article
CAS
PubMed
Google Scholar
Gross DS, Garrard WT: Nuclease hypersensitive sites in chromatin. Annu Rev Biochem. 1988, 57: 159-197. 10.1146/annurev.bi.57.070188.001111.
Article
CAS
PubMed
Google Scholar
Teytelman L, Ozaydin B, Zill O, Lefrancois P, Snyder M, Rine J, Eisen MB: Impact of chromatin structures on DNA processing for genomic analyses. PLoS One. 2009, 4: e6700-10.1371/journal.pone.0006700.
Article
PubMed Central
PubMed
Google Scholar
Auerbach RK, Euskirchen G, Rozowsky J, Lamarre-Vincent N, Moqtaderi Z, Lefrancois P, Struhl K, Gerstein M, Snyder M: Mapping accessible chromatin regions using Sono-Seq. Proc Natl Acad Sci USA. 2009, 106: 14926-14931. 10.1073/pnas.0905443106.
Article
CAS
PubMed Central
PubMed
Google Scholar
Schwartz YB, Kahn TG, Pirrotta V: Characteristic low density and shear sensitivity of cross-linked chromatin containing polycomb complexes. Mol Cell Biol. 2005, 25: 432-439. 10.1128/MCB.25.1.432-439.2005.
Article
CAS
PubMed Central
PubMed
Google Scholar
Ruthenburg AJ, Li H, Patel DJ, Allis CD: Multivalent engagement of chromatin modifications by linked binding modules. Nat Rev Mol Cell Biol. 2007, 8: 983-994. 10.1038/nrm2298.
Article
CAS
PubMed
Google Scholar
Jenuwein T, Allis CD: Translating the histone code. Science. 2001, 293: 1074-1080. 10.1126/science.1063127.
Article
CAS
PubMed
Google Scholar
Gupta A, Guerin-Peyrou TG, Sharma GG, Park C, Agarwal M, Ganju RK, Pandita S, Choi K, Sukumar S, Pandita RK, Ludwig T, Pandita TK: The mammalian ortholog of Drosophila MOF that acetylates histone H4 lysine 16 is essential for embryogenesis and oncogenesis. Mol Cell Biol. 2008, 28: 397-409. 10.1128/MCB.01045-07.
Article
CAS
PubMed Central
PubMed
Google Scholar
Taipale M, Rea S, Richter K, Vilar A, Lichter P, Imhof A, Akhtar A: hMOF histone acetyltransferase is required for histone H4 lysine 16 acetylation in mammalian cells. Mol Cell Biol. 2005, 25: 6798-6810. 10.1128/MCB.25.15.6798-6810.2005.
Article
CAS
PubMed Central
PubMed
Google Scholar
Smith ER, Eisen A, Gu W, Sattah M, Pannuti A, Zhou J, Cook RG, Lucchesi JC, Allis CD: ESA1 is a histone acetyltransferase that is essential for growth in yeast. Proc Natl Acad Sci USA. 1998, 95: 3561-3565. 10.1073/pnas.95.7.3561.
Article
CAS
PubMed Central
PubMed
Google Scholar
Hilfiker A, Hilfiker-Kleiner D, Pannuti A, Lucchesi JC: mof, a putative acetyl transferase gene related to the Tip60 and MOZ human genes and to the SAS genes of yeast, is required for dosage compensation in Drosophila. Embo J. 1997, 16: 2054-2060. 10.1093/emboj/16.8.2054.
Article
CAS
PubMed Central
PubMed
Google Scholar
Lavender JS, Birley AJ, Palmer MJ, Kuroda MI, Turner BM: Histone H4 acetylated at lysine 16 and proteins of the Drosophila dosage compensation pathway co-localize on the male X chromosome through mitosis. Chromosome Res. 1994, 2: 398-404. 10.1007/BF01552799.
Article
CAS
PubMed
Google Scholar
Bone JR, Lavender J, Richman R, Palmer MJ, Turner BM, Kuroda MI: Acetylated histone H4 on the male X chromosome is associated with dosage compensation in Drosophila. Genes Dev. 1994, 8: 96-104. 10.1101/gad.8.1.96.
Article
CAS
PubMed
Google Scholar
Kind J, Vaquerizas JM, Gebhardt P, Gentzel M, Luscombe NM, Bertone P, Akhtar A: Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila. Cell. 2008, 133: 813-828. 10.1016/j.cell.2008.04.036.
Article
CAS
PubMed
Google Scholar
Birchler JA, Fernandez HR, Kavi HH: Commonalities in compensation. Bioessays. 2006, 28: 565-568. 10.1002/bies.20408.
Article
CAS
PubMed
Google Scholar
Bao X, Cai W, Deng H, Zhang W, Krencik R, Girton J, Johansen J, Johansen KM: The COOH-terminal domain of the JIL-1 histone H3S10 kinase interacts with histone H3 and is required for correct targeting to chromatin. J Biol Chem. 2008, 283: 32741-32750. 10.1074/jbc.M806227200.
Article
CAS
PubMed Central
PubMed
Google Scholar
Jin Y, Wang Y, Johansen J, Johansen KM: JIL-1, a chromosomal kinase implicated in regulation of chromatin structure, associates with the male specific lethal (MSL) dosage compensation complex. J Cell Biol. 2000, 149: 1005-1010. 10.1083/jcb.149.5.1005.
Article
CAS
PubMed Central
PubMed
Google Scholar
Jin Y, Wang Y, Walker DL, Dong H, Conley C, Johansen J, Johansen KM: JIL-1: a novel chromosomal tandem kinase implicated in transcriptional regulation in Drosophila. Mol Cell. 1999, 4: 129-135. 10.1016/S1097-2765(00)80195-1.
Article
CAS
PubMed
Google Scholar
Lerach S, Zhang W, Deng H, Bao X, Girton J, Johansen J, Johansen KM: JIL-1 kinase, a member of the male-specific lethal (MSL) complex, is necessary for proper dosage compensation of eye pigmentation in Drosophila. Genesis. 2005, 43: 213-215. 10.1002/gene.20172.
Article
CAS
PubMed Central
PubMed
Google Scholar
Barski A, Zhao K: Genomic location analysis by ChIP-Seq. J Cell Biochem. 2009, 107: 11-18. 10.1002/jcb.22077.
Article
CAS
PubMed
Google Scholar
Riddle NC, Shaffer CD, Elgin SC: A lot about a little dot - lessons learned from Drosophila melanogaster chromosome 4. Biochem Cell Biol. 2009, 87: 229-241. 10.1139/O08-119.
Article
CAS
PubMed Central
PubMed
Google Scholar
Sabo PJ, Humbert R, Hawrylycz M, Wallace JC, Dorschner MO, McArthur M, Stamatoyannopoulos JA: Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries. Proc Natl Acad Sci USA. 2004, 101: 4537-4542. 10.1073/pnas.0400678101.
Article
CAS
PubMed Central
PubMed
Google Scholar
Rastelli L, Kuroda MI: An analysis of maleless and histone H4 acetylation in Drosophila melanogaster spermatogenesis. Mech Dev. 1998, 71: 107-117. 10.1016/S0925-4773(98)00009-4.
Article
CAS
PubMed
Google Scholar
Vicoso B, Charlesworth B: The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: a consequence of dosage compensation?. J Mol Evol. 2009, 68: 576-583. 10.1007/s00239-009-9235-4.
Article
CAS
PubMed
Google Scholar
Zhang W, Deng H, Bao X, Lerach S, Girton J, Johansen J, Johansen KM: The JIL-1 histone H3S10 kinase regulates dimethyl H3K9 modifications and heterochromatic spreading in Drosophila. Development. 2006, 133: 229-235. 10.1242/dev.02199.
Article
CAS
PubMed
Google Scholar
de Wit E, Braunschweig U, Greil F, Bussemaker HJ, van Steensel B: Global chromatin domain organization of the Drosophila genome. PLoS Genet. 2008, 4: e1000045-10.1371/journal.pgen.1000045.
Article
PubMed Central
PubMed
Google Scholar
Gelbart ME, Larschan E, Peng S, Park PJ, Kuroda MI: Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation. Nat Struct Mol Biol. 2009, 16: 825-832. 10.1038/nsmb.1644.
Article
CAS
PubMed Central
PubMed
Google Scholar
Ohno S: Sex chromosomes and sex-linked genes. 1967, Berlin, New York,: Springer
Book
Google Scholar
Charlesworth B: Model for evolution of Y chromosomes and dosage compensation. Proc Natl Acad Sci USA. 1978, 75: 5618-5622. 10.1073/pnas.75.11.5618.
Article
CAS
PubMed Central
PubMed
Google Scholar
Lindsley DL, Sandler L, Baker BS, Carpenter AT, Denell RE, Hall JC, Jacobs PA, Miklos GL, Davis BK, Gethmann RC, Hardy RW, Steven AH, Miller M, Nozawa H, Parry DM, Gould-Somero M, Gould-Somero M: Segmental aneuploidy and the genetic gross structure of the Drosophila genome. Genetics. 1972, 71: 157-184.
CAS
PubMed Central
PubMed
Google Scholar
Payer B, Lee JT: X chromosome dosage compensation: how mammals keep the balance. Annu Rev Genet. 2008, 42: 733-772. 10.1146/annurev.genet.42.110807.091711.
Article
CAS
PubMed
Google Scholar
Lin H, Gupta V, Vermilyea MD, Falciani F, Lee JT, O'Neill LP, Turner BM: Dosage compensation in the mouse balances up-regulation and silencing of X-linked genes. PLoS Biol. 2007, 5: e326-10.1371/journal.pbio.0050326.
Article
PubMed Central
PubMed
Google Scholar
Nguyen DK, Disteche CM: Dosage compensation of the active X chromosome in mammals. Nat Genet. 2006, 38: 47-53. 10.1038/ng1705.
Article
CAS
PubMed
Google Scholar
Gilfillan GD, Dahlsveen IK, Becker PB: Lifting a chromosome: dosage compensation in Drosophila melanogaster. FEBS Lett. 2004, 567: 8-14. 10.1016/j.febslet.2004.03.110.
Article
CAS
PubMed
Google Scholar
Birch-Machin I, Gao S, Huen D, McGirr R, White RA, Russell S: Genomic analysis of heat-shock factor targets in Drosophila. Genome Biol. 2005, 6: R63-10.1186/gb-2005-6-7-r63.
Article
PubMed Central
PubMed
Google Scholar
Johnston R, Wang B, Nuttall R, Doctolero M, Edwards P, Lu J, Vainer M, Yue H, Wang X, Minor J, Chan C, Lash A, Goralski T, Parisi M, Oliver B, Eastman S: FlyGEM, a full transcriptome array platform for the Drosophila community. Genome Biol. 2004, 5: R19-10.1186/gb-2004-5-3-r19.
Article
PubMed Central
PubMed
Google Scholar
Smith ER, Allis CD, Lucchesi JC: Linking global histone acetylation to the transcription enhancement of X-chromosomal genes in Drosophila males. J Biol Chem. 2001, 276: 31483-31486. 10.1074/jbc.C100351200.
Article
CAS
PubMed
Google Scholar
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YH, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Gabor GL, Abril JF, Agbayani A, An HJ, Andrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies P, de Pablos B, Delcher A, Deng Z, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong F, Gorrell JH, Gu Z, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston KA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Karpen GH, Ke Z, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravitz S, Kulp D, Lai Z, Lasko P, Lei Y, Levitsky AA, Li J, Li Z, Liang Y, Lin X, Liu X, Mattei B, McIntosh TC, McLeod MP, McPherson D, Merkulov G, Milshina NV, Mobarry C, Morris J, Moshrefi A, Mount SM, Moy M, Murphy B, Murphy L, Muzny DM, Nelson DL, Nelson DR, Nelson KA, Nixon K, Nusskern DR, Pacleb JM, Palazzolo M, Pittman GS, Pan S, Pollard J, Puri V, Reese MG, Reinert K, Remington K, Saunders RD, Scheeler F, Shen H, Shue BC, Siden-Kiamos I, Simpson M, Skupski MP, Smith T, Spier E, Spradling AC, Stapleton M, Strong R, Sun E, Svirskas R, Tector C, Turner R, Venter E, Wang AH, Wang X, Wang ZY, Wassarman DA, Weinstock GM, Weissenbach J, Williams SM, Woodage T, Worley KC, Wu D, Yang S, Yao QA, Ye J, Yeh RF, Zaveri JS, Zhan M, Zhang G, Zhao Q, Zheng L, Zheng XH, Zhong FN, Zhong W, Zhou X, Zhu S, Zhu X, Smith HO, Gibbs RA, Myers EW, Rubin GM, Venter JC: The genome sequence of Drosophila melanogaster. Science. 2000, 287: 2185-2195. 10.1126/science.287.5461.2185.
Article
PubMed
Google Scholar
Langmead B, Trapnell C, Pop M, Salzberg SL: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10: R25-10.1186/gb-2009-10-3-r25.
Article
PubMed Central
PubMed
Google Scholar
Drysdale R: FlyBase: a database for the Drosophila research community. Methods Mol Biol. 2008, 420: 45-59. full_text.
Article
CAS
PubMed
Google Scholar
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004, 5: R80-10.1186/gb-2004-5-10-r80.
Article
PubMed Central
PubMed
Google Scholar
Zhang Y, Sturgill D, Parisi M, Kumar S, Oliver B: Constraint and turnover in sex-biased gene expression in the genus Drosophila. Nature. 2007, 450: 233-237. 10.1038/nature06323.
Article
CAS
PubMed Central
PubMed
Google Scholar