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Table 2 Microarray experimental design:

From: Differential gene expression in nearly isogenic lines with QTL for partial resistance to Puccinia hordei in barley

Array slide Replicate Sample pairs
   Name Treatment Label Name Treatment Label
1 I L94 Mock C3 L94 Ph-infected C5
1 I Vada Mock C3 Vada Ph-infected C5
1 II L94 Mock C3 L94 Ph-infected C5
1 II Vada Mock C3 Vada Ph-infected C5
1 III L94 Mock C5 L94 Ph-infected C3
1 III Vada Mock C5 Vada Ph-infected C3
1 IV L94 Mock C5 L94 Ph-infected C3
1 IV Vada Mock C5 Vada Ph-infected C3
2 I L94 Ph-infected C3 Vada Ph-infected C5
2 II L94 Ph-infected C5 Vada Ph-infected C3
2 III L94 Ph-infected C3 Vada Ph-infected C5
2 IV L94 Ph-infected C5 Vada Ph-infected C3
3 I L94 Ph-infected C3 L94-Rphq 2+ 3 Ph-infected C5
3 I Vada Ph-infected C3 Vada- Rphq 2+ 3 Ph-infected C5
3 II L94 Ph-infected C5 L94- Rphq 2+ 3 Ph-infected C3
3 II Vada Ph-infected C5 Vada- Rphq 2+ 3 Ph-infected C3
3 III L94 Ph-infected C3 L94- Rphq 2+ 3 Ph-infected C5
3 III Vada Ph-infected C3 Vada- Rphq 2+ 3 Ph-infected C5
3 IV L94 Ph-infected C5 L94- Rphq 2+ 3 Ph-infected C3
3 IV Vada Ph-infected C5 Vada- Rphq 2+ 3 Ph-infected C3
  1. Array slide 1: Ph-infected vs. mock-inoculated controls for Ph-responsive genes; Array slide 2: Ph-infected L94 vs. Ph-infected Vada for differentially expressed genes; Array slide 3: Ph-infected parents vs. Ph-infected QTL-NILs for QTL specific and differentially expressed genes.