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Table 2 Top 10 most abundant protein-coding transcripts identified in each alfalfa stem internodes library.

From: Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

Unique_ID Libraries Putative Functions
  708_ES 708_PES 773_ES 773_PES  
------------ RPKM-normalized expression counts ------------
MSGI1_2417 6068 (1) 6754 (1) 3271 (2) 6034 (1) Leucine-rich repeat family protein
MSGI1_8746 4812 (2) 4697 (3) 3850 (1) 3586 (2) Chlorophyll a/b binding protein
MSGI1_523 4213 (3) 5428 (2) 2719 (6) 3552 (3) Beta ketoacyl CoA synthase
MSGI1_18145 3859 (4) 979 2555 (8) 3400 (4) Rubisco small chain
MSGI1_27309 748 2453 (7) 1317 3336 (5) Metallothionein
MSGI1_11989 2315 (6) 2574 (5) 1171 2387 (6) Uncharacterized protein
MSGI1_6529 265 328 2393 (9) 2350 (7) Glycine rich protein
MSGI1_1166 1458 1486 901 2182 (8) AAA ATPase
MSGI1_62398 160 225 1267 2168 (9) Stress (ABA)-inducible protein
MSGI1_21335 2012 (8) 2465 (6) 1275 2155 (10) Cytochrome P450-like
MSGI1_8707 2762 (5) 2632 (4) 1854 1833 Chlorophyll a/b binding protein
MSGI1_4749 1425 1682 (10) 1298 1693 Polyubiquitin
MSGI1_5229 2287 (7) 2140 (8) 1507 1561 Chlorophyll a/b binding protein
MSGI1_1270 744 969 3145 (3) 1470 Caffeic acid O-methyltransferase
MSGI1_1415 1723 (9) 1215 764 1468 Elongation factor 1-alpha
MSGI1_36219 1633 1777 (9) 723 1256 Uncharacterized protein
MSGI1_5153 1705 (10) 1531 1058 1090 Chlorophyll a/b binding protein
MSGI1_29285 324 513 2861 (4) 1035 Stress (ABA)-inducible protein
MSGI1_13276 86 77 2750 (5) 423 Cold acclimation responsive protein
MSGI1_7576 274 114 2357 (10) 284 Cold-acclimation-specific protein (CAS)
MSGI1_96533 11 5 2580 (7) 16 Cold acclimation-specific protein CAS)
  1. Top 10 most abundant protein-coding transcripts selected from each library are highlighted in bold. Numbers enclosed in parenthesis represent rank based on transcript frequency for the top 10 most abundant protein-coding transcripts in each library.