Searching ChIP-seq genomic islands for combinatorial regulatory codes in mouse embryonic stem cells

BMC Genomics

Table 3 Ten-fold CV errors and corresponding standard errors

Method	uniformly-high cluster	Oct4 cluster	Myc cluster	Oct4-moderate cluster
NB_MF	0.27 (0.02)	0.45 (0.02)	0.42 (0.02)	0.29 (0.02)
CART	0.27 (0.02)	0.43 (0.02)	0.44 (0.02)	0.28 (0.02)
NB	0.26 (0.02)	0.36 (0.02)	0.37 (0.02)	0.29 (0.02)
(NB_MF - NB)/NB_MF	0.04	0.20	0.11	0.00
(CART - NB)/CART	0.04	0.16	0.16	-0.04

Note: NB_MF--classification with NB classifiers based on only main factors; CART--classification with CART based on three principal components of association scores of main factors as in [14]; NB--classification with NB classifiers utilizing both main factors and cofactors.

ISSN: 1471-2164