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Table 4 Transposable element (TE) coverage and diversity in top Ae. aegypti piRNA clusters.

From: The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs

Cluster ID Supercontig start stop cluster TE coverage1 mean TE coverage of random sequences2 number of standard deviations, TE coverage3 number of TE elements in cluster4 mean number of TE elements in random sequences number of standard deviations, number of elements
1 supercont1.478 490638 568444 0.226676263 0.419001465 -1.416991717 38 61.235 -1.304074578
2 supercont1.1 1151499 1278727 0.487436041 0.403024924 0.580732819 49 85.661 -1.343104567
3 supercont1.286 1260644 1444752 0.395222395 0.396091577 -0.005621894 64 107.978 -1.210704338
4 supercont1.943 196392 264127 0.736078304 0.416404001 2.293783988 44 54.717 -0.642122401
5 supercont1.209 235416 285783 0.410935515 0.419113904 -0.058733961 24 43.614 -1.499284524
6 supercont1.20 3110107 3224809 0.554179054 0.418089746 0.964456246 59 81.042 -0.944476926
7 supercont1.402 860224 953549 0.402781647 0.411314707 -0.059586613 42 69.042 -1.264686072
8 supercont1.1145 61909 94822 0.391930486 0.417567435 -0.178082295 22 30.692 -0.897834546
9 supercont1.435 926765 972082 0.302241935 0.419841185 -0.837861518 22 39.9 -1.508018889
10 supercont1.379 15854 108077 0.611099063 0.409120133 1.411986233 50 69.013 -0.893134363
11 supercont1.555 368190 374829 0 0.370578852 -1.834660452 0 7.416 -2.100509042
12 supercont1.209 305189 366980 0.459768255 0.423567623 0.271641456 22 51.899 -2.088008606
13 supercont1.109 91700 129810 0.51195193 0.426534479 0.603357822 17 35.09 -1.769148524
14 supercont1.697 504405 552871 0.498813626 0.428710684 0.485977742 30 42.633 -0.960185323
15 supercont1.164 1210657 1248495 0.572980258 0.42009945 1.044389637 35 34.491 0.047763239
16 supercont1.83 1415166 1433185 0.648834628 0.409050447 1.485209324 16 18.324 -0.361868136
17 supercont1.41 2610658 2644427 0.521261475 0.430863484 0.624645572 34 31.716 0.247718053
18 supercont1.2 275115 329629 0.446170779 0.422215779 0.174896759 53 46.562 0.478972045
19 supercont1.38 3097699 3148574 0.389653275 0.427616491 -0.271821406 52 43.976 0.62870919
20 supercont1.192 1700025 1763125 0.514270772 0.419413566 0.675173572 59 52.334 0.430866518
21 supercont1.38 2995043 3039699 0.538146315 0.428465514 0.764356465 40 39.557 0.037258641
22 supercont1.109 1912714 1927564 0.013803784 0.405080673 -2.303191497 5 15.475 -1.787236268
23 supercont1.194 895141 974760 0.510474755 0.421488238 0.642327725 64 62.082 0.1058288
24 supercont1.226 725419 748642 0.575051671 0.411773027 1.040816358 25 22.408 0.332107048
25 supercont1.518 151663 158105 0.458637281 0.360901428 0.487675463 14 7.232 1.906352115
26 supercont1.38 2572763 2684616 0.49881095 0.402104083 0.653081355 87 78.081 0.349121968
27 supercont1.90 907728 931721 0.420813537 0.422340266 -0.010037376 26 23.628 0.304378812
28 supercont1.2 1423334 1464722 0.508492595 0.4232601 0.598461412 35 37.239 -0.202802747
29 supercont1.192 551266 584318 0.405984328 0.414953558 -0.060505091 31 30.782 0.02131827
30 supercont1.1 1420282 1453931 0.61961367 0.423640435 1.324250019 26 31.445 -0.541018989
  1. 1 Proportion the cluster with similarity to known Ae. aegypti TE sequences. Data derived from running the program RepeatMasker.
  2. 2 1000 random sequences of the same bp. size as the cluster were used.
  3. 3 Number of standard deviations between the the observed TE coverage and the mean TE coverage of random sequences
  4. 4 Number of different kinds of TE sequences found in the cluster