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Table 4 Transposable element (TE) coverage and diversity in top Ae. aegypti piRNA clusters.

From: The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs

Cluster ID

Supercontig

start

stop

cluster TE coverage1

mean TE coverage of random sequences2

number of standard deviations, TE coverage3

number of TE elements in cluster4

mean number of TE elements in random sequences

number of standard deviations, number of elements

1

supercont1.478

490638

568444

0.226676263

0.419001465

-1.416991717

38

61.235

-1.304074578

2

supercont1.1

1151499

1278727

0.487436041

0.403024924

0.580732819

49

85.661

-1.343104567

3

supercont1.286

1260644

1444752

0.395222395

0.396091577

-0.005621894

64

107.978

-1.210704338

4

supercont1.943

196392

264127

0.736078304

0.416404001

2.293783988

44

54.717

-0.642122401

5

supercont1.209

235416

285783

0.410935515

0.419113904

-0.058733961

24

43.614

-1.499284524

6

supercont1.20

3110107

3224809

0.554179054

0.418089746

0.964456246

59

81.042

-0.944476926

7

supercont1.402

860224

953549

0.402781647

0.411314707

-0.059586613

42

69.042

-1.264686072

8

supercont1.1145

61909

94822

0.391930486

0.417567435

-0.178082295

22

30.692

-0.897834546

9

supercont1.435

926765

972082

0.302241935

0.419841185

-0.837861518

22

39.9

-1.508018889

10

supercont1.379

15854

108077

0.611099063

0.409120133

1.411986233

50

69.013

-0.893134363

11

supercont1.555

368190

374829

0

0.370578852

-1.834660452

0

7.416

-2.100509042

12

supercont1.209

305189

366980

0.459768255

0.423567623

0.271641456

22

51.899

-2.088008606

13

supercont1.109

91700

129810

0.51195193

0.426534479

0.603357822

17

35.09

-1.769148524

14

supercont1.697

504405

552871

0.498813626

0.428710684

0.485977742

30

42.633

-0.960185323

15

supercont1.164

1210657

1248495

0.572980258

0.42009945

1.044389637

35

34.491

0.047763239

16

supercont1.83

1415166

1433185

0.648834628

0.409050447

1.485209324

16

18.324

-0.361868136

17

supercont1.41

2610658

2644427

0.521261475

0.430863484

0.624645572

34

31.716

0.247718053

18

supercont1.2

275115

329629

0.446170779

0.422215779

0.174896759

53

46.562

0.478972045

19

supercont1.38

3097699

3148574

0.389653275

0.427616491

-0.271821406

52

43.976

0.62870919

20

supercont1.192

1700025

1763125

0.514270772

0.419413566

0.675173572

59

52.334

0.430866518

21

supercont1.38

2995043

3039699

0.538146315

0.428465514

0.764356465

40

39.557

0.037258641

22

supercont1.109

1912714

1927564

0.013803784

0.405080673

-2.303191497

5

15.475

-1.787236268

23

supercont1.194

895141

974760

0.510474755

0.421488238

0.642327725

64

62.082

0.1058288

24

supercont1.226

725419

748642

0.575051671

0.411773027

1.040816358

25

22.408

0.332107048

25

supercont1.518

151663

158105

0.458637281

0.360901428

0.487675463

14

7.232

1.906352115

26

supercont1.38

2572763

2684616

0.49881095

0.402104083

0.653081355

87

78.081

0.349121968

27

supercont1.90

907728

931721

0.420813537

0.422340266

-0.010037376

26

23.628

0.304378812

28

supercont1.2

1423334

1464722

0.508492595

0.4232601

0.598461412

35

37.239

-0.202802747

29

supercont1.192

551266

584318

0.405984328

0.414953558

-0.060505091

31

30.782

0.02131827

30

supercont1.1

1420282

1453931

0.61961367

0.423640435

1.324250019

26

31.445

-0.541018989

  1. 1 Proportion the cluster with similarity to known Ae. aegypti TE sequences. Data derived from running the program RepeatMasker.
  2. 2 1000 random sequences of the same bp. size as the cluster were used.
  3. 3 Number of standard deviations between the the observed TE coverage and the mean TE coverage of random sequences
  4. 4 Number of different kinds of TE sequences found in the cluster
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BMC Genomics

ISSN: 1471-2164

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