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Table 1 Effect of k-mer size on assembling performance of transcriptome

From: De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments

k- mer Average coverage Average length (bp) Maximum length
(bp)
Total transcripts Per cent transcripts above 1000 bp
19 76.6 421.23 7102 89,988 7.54
21 76.6 432.42 6873 83,774 8.94
23 76.6 439.55 5759 74,336 9.16
25 76.6 417.5 6350 62,526 8.24
27 77.8 379.85 5097 47,389 6.73
29 86.9 333.96 4441 26,733 4.59