Table 1 Effect of k-mer size on assembling performance of transcriptome
k- mer | Average coverage | Average length (bp) | Maximum length (bp) | Total transcripts | Per cent transcripts above 1000 bp |
|---|---|---|---|---|---|
19 | 76.6 | 421.23 | 7102 | 89,988 | 7.54 |
21 | 76.6 | 432.42 | 6873 | 83,774 | 8.94 |
23 | 76.6 | 439.55 | 5759 | 74,336 | 9.16 |
25 | 76.6 | 417.5 | 6350 | 62,526 | 8.24 |
27 | 77.8 | 379.85 | 5097 | 47,389 | 6.73 |
29 | 86.9 | 333.96 | 4441 | 26,733 | 4.59 |