Arumuganathan K, Earle E: Nuclear DNA content of some important plant species. Plant Molecular Biology Reporter. 1991, 9 (3): 208-218. 10.1007/BF02672069.
Article
CAS
Google Scholar
Peach Genome v1.0, International Peach Genome Initiative. [http://www.phytozome.net/peach.php#A]
Mariette S, Tavaud M, Arunyawat U, Capdeville G, Millan M, Salin F: Population structure and genetic bottleneck in sweet cherry estimated with SSRs and the gametophytic self-incompatibility locus. BMC Genetics. 2010, 11:
Google Scholar
Li S, Yin T, Wang M, Tuskan G: Characterization of microsatellites in the coding regions of the Populus genome. Molecular Breeding. 2011, 27 (1): 59-66. 10.1007/s11032-010-9413-5.
Article
CAS
Google Scholar
Celton JM, Tustin D, Chagne D, Gardiner S: Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics & Genomes. 2009, 5 (1): 93-107. 10.1007/s11295-008-0171-z.
Article
Google Scholar
Aranzana M, Carbo J, Arus P: Microsatellite variability in peach Prunus persica (L.) Batsch: cultivar identification, marker mutation, pedigree inferences and population structure. TAG Theoretical and Applied Genetics. 2003, 106 (8): 1341-1352.
CAS
PubMed
Google Scholar
Rafalski JA, Tingey SV: Genetic Diagnostics in plant-breeding - RAPDs, Microsatellites and Machines. Trends in Genetics. 1993, 9 (8): 275-280. 10.1016/0168-9525(93)90013-8.
Article
CAS
PubMed
Google Scholar
Zeid M, Mitchell S, Link W, Carter M, Nawar A, Fulton T, Kresovich S: Simple sequence repeats (SSRs) in faba bean: new loci from Orobanche-resistant cultivar 'Giza 402'. Plant Breeding. 2009, 128 (2): 149-155. 10.1111/j.1439-0523.2008.01584.x.
Article
CAS
Google Scholar
Zane L, Bargelloni L, Patarnello T: Strategies for microsatellite isolation: a review. Molecular Ecology. 2002, 11 (1): 1-16. 10.1046/j.0962-1083.2001.01418.x.
Article
CAS
PubMed
Google Scholar
Kim MY, Van K, Lestari P, Moon JK, Lee SH: SNP identification and SNAP marker development for a GmNARK gene controlling supernodulation in soybean. Theoretical and Applied Genetics. 2005, 110 (6): 1003-1010. 10.1007/s00122-004-1887-2.
Article
CAS
PubMed
Google Scholar
Nilsen H, Hayes B, Berg PR, Roseth A, Sundsaasen KK, Nilsen K, Lien S: Construction of a dense SNP map for bovine chromosome 6 to assist the assembly of the bovine genome sequence. Anim Genet. 2008, 39 (2): 97-104. 10.1111/j.1365-2052.2007.01686.x.
Article
CAS
PubMed
Google Scholar
Ganal MW, Altmann T, Roder MS: SNP identification in crop plants. Current Opinion in Plant Biology. 2009, 12 (2): 211-217. 10.1016/j.pbi.2008.12.009.
Article
CAS
PubMed
Google Scholar
Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML: Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nature Reviews Genetics. 2011, 12 (7): 499-510. 10.1038/nrg3012.
Article
CAS
PubMed
Google Scholar
Shendure J, Ji HL: Next-generation DNA sequencing. Nature Biotechnology. 2008, 26 (10): 1135-1145. 10.1038/nbt1486.
Article
CAS
PubMed
Google Scholar
Bundock PC, Eliott FG, Ablett G, Benson AD, Casu RE, Aitken KS, Henry RJ: Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing. Plant Biotechnology Journal. 2009, 7 (4): 347-354. 10.1111/j.1467-7652.2009.00401.x.
Article
CAS
PubMed
Google Scholar
Folta KM, Clancy MA, Chamala S, Brunings AM, Dhingra A, Gomide L, Kulathinal RJ, Peres N, Davis TM, Barbazuk WB: A transcript accounting from diverse tissues of a cultivated strawberry. Plant Genome. 2010, 3 (2): 90-105. 10.3835/plantgenome2010.02.0003.
Article
CAS
Google Scholar
Isom SC, Spollen WG, Blake SM, Bauer BK, Springer GK, Prather RS: Transcriptional profiling of day 12 porcine embryonic disc and Trophectoderm samples using ultra-deep sequencing technologies. Molecular Reproduction and Development. 2010, 77 (9): 812-819. 10.1002/mrd.21226.
Article
CAS
PubMed
Google Scholar
Cantacessi C, Mitreva M, Jex AR, Young ND, Campbell BE, Hall RS, Doyle MA, Ralph SA, Rabelo EM, Ranganathan S, Sternberg PW, Loukas A, Gasser RB: Massively parallel sequencing and analysis of the Necator americanus transcriptome. PLOS Neglected Tropical Diseases. 2010, 4 (5): 11-
Article
Google Scholar
Eveland AL, McCarty DR, Koch KE: Transcript profiling by 3'-untranslated region sequencing resolves expression of gene families. Plant Physiology. 2008, 146 (1): 32-44.
Article
PubMed Central
CAS
PubMed
Google Scholar
Tewhey R, Bansal V, Torkamani A, Topol EJ, Schork NJ: The importance of phase information for human genomics. Nature Reviews Genetics. 2011, 12: 215-223. 10.1038/nrg2950.
Article
PubMed Central
CAS
PubMed
Google Scholar
Suk E-KK, McEwen GK, Duitama J, Nowick K, Schulz S, Palczewski S, Schreiber S, Holloway DT, McLaughlin S, Peckham H, Lee C, Huebsch T, Hoehe MR: A comprehensively molecular haplotype-resolved genome of a European individual. Genome Research. 2011
Google Scholar
Deloukas P, Bentley D: The HapMap project and its application to genetic studies of drug response. Pharmacogenomics J. 2003, 4 (2): 88-90.
Article
Google Scholar
Johnson GCL, Esposito L, Barratt BJ, Smith AN, Heward J, Di Genova G, Ueda H, Cordell HJ, Eaves IA, Dudbridge F, Twells RCJ, Payne F, Hughes W, Nutland S, Stevens H, Carr P, Tuomilehto-Wolf E, Tuomilehto J, Gough SCL, Clayton DG, Todd JA: Haplotype tagging for the identification of common disease genes. Nature Genetics. 2001, 29 (2): 233-237. 10.1038/ng1001-233.
Article
CAS
PubMed
Google Scholar
He D, Choi A, Pipatsrisawat K, Darwiche A, Eskin E: Optimal algorithms for haplotype assembly from whole-genome sequence data. Bioinformatics. 2010, 26 (12): i183-i190. 10.1093/bioinformatics/btq215.
Article
PubMed Central
CAS
PubMed
Google Scholar
Snyder M, Wang Z, Gerstein M: RNA-Seq: a revolutionary tool for transcriptomics. Nature Reviews Genetics. 2009, 10 (1): 57-63. 10.1038/nrg2484.
Article
PubMed Central
PubMed
Google Scholar
Primer3 on the www for general users and for biologist programmers. Edited by: Rozen S, Skaletsky HJ. 2000, Totowa, NJ: Humana Press
Doyle JJ, Doyle JL: Isolation of plant DNA from fresh tissue. Focus. 1990, 12 (13-15):
Emrich SJ, Li' L, Wen TJ, Yandeau-Nelson MD, Fu Y, Guo L, Chou HH, Aluru S, Ashlock DA, Schnable PS: Nearly identical paralogs: Implications for maize (Zea mays L.) genome evolution. Genetics. 2007, 175 (1): 429-439.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kulheim C, Yeoh SH, Maintz J, Foley WJ, Moran GF: Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways. Bmc Genomics. 2009, 10:
Google Scholar
Hyten DL, Cannon SB, Song QJ, Weeks N, Fickus EW, Shoemaker RC, Specht JE, Farmer AD, May GD, Cregan PB: High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. Bmc Genomics. 2010, 11:
Google Scholar
Varala K, Swaminathan K, Li Y, Hudson ME: Rapid Genotyping of Soybean Cultivars Using High Throughput Sequencing. Plos One. 2011, 6 (9):
Whiting , Matthew D, Lang , Gregory , Ophardt , David : Rootstock and training system affect sweet cherry growth, yield, and fruit quality. 2005, Alexandria, VA, ETATS-UNIS: American Society for Horticultural Science, 40:
Google Scholar
Xiong M, Zhao Z, Arnold J, Yu F: Next-Generation Sequencing. Journal of Biomedicine and Biotechnology. 2010, 2010:
Google Scholar
Chaisan T, Van K, Kim M, Kim K, Choi BS, Lee SH: In silico single nucleotide polymorphism discovery and application to marker-assisted selection in soybean. Molecular Breeding. 1-13.
Li J, Wang X, Dong R, Yang Y, Zhou J, Yu C, Cheng Y, Yan C, Chen J: Evaluation of High-Resolution Melting for Gene Mapping in Rice. Plant Molecular Biology Reporter. 2011, 29 (4): 979-985. 10.1007/s11105-011-0289-2.
Article
CAS
Google Scholar
Mader , Eduard , Lohwasser , Ulrike , Rner , Andreas , Novak , Johannes : Population structures of genebank accessions of Salvia officinalis L. (Lamiaceae) revealed by high resolution melting analysis. 2010, Kidlington, ROYAUME-UNI: Elsevier, 38:
Google Scholar
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen ZT, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer MLI, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J : Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005, 437 (7057): 376-380.
PubMed Central
CAS
PubMed
Google Scholar
Barbazuk WB, Emrich SJ, Chen HD, Li L, Schnable PS: SNP discovery via 454 transcriptome sequencing. Plant Journal. 2007, 51 (5): 910-918. 10.1111/j.1365-313X.2007.03193.x.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wu SB, Wirthensohn M, Hunt P, Gibson J, Sedgley M: High resolution melting analysis of almond SNPs derived from ESTs. TAG Theoretical and Applied Genetics. 2008, 118 (1): 1-14. 10.1007/s00122-008-0870-8.
Article
CAS
PubMed
Google Scholar
A guide to HRM Analysis. [http://www.appliedbiosystems.com/etc/medialib/appliedbio-media-library/documents/application-and-technology/real-time-pcr/hrm.Par.73223.File.pdf]
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S: The genome of the domesticated apple (Malus × domestica Borkh.). Nature Genetics. 2010, 42 (10): 833-+. 10.1038/ng.654.
Article
CAS
PubMed
Google Scholar
Fang JG, Twito T, Zhang Z, Chao CCT: Genetic relationships among fruiting-mei (Prunus mume Sieb. et Zucc.) cultivars evaluated with AFLP and SNP markers. Genome. 2006, 49 (10): 1256-1264. 10.1139/g06-097.
Article
CAS
PubMed
Google Scholar