Wyllie TD: Charcoal rot of soybean-current status. Soybean Diseases of the North Central Region. Edited by: Wyllie TD, Scott DH. 1988, APS, St. Paul, 106-113.
Google Scholar
Su G, Suh SO, Schneider RW, Russin JS: Host specialization in the charcoal rot fungus, Macrophomina phaseolina. Phytopathology. 2001, 91: 120-126. 10.1094/PHYTO.2001.91.2.120.
Article
CAS
PubMed
Google Scholar
Mayek-Pérez N, López-Castañeda C, López-Salinas E, Cumpián-Gutiérrez J, Acosta-Gallegos JA: Macrophomina phaseolina resistance in common bean under field conditions in Mexico. Agrociencia. 2001, 35: 649-661.
Google Scholar
Raguchander T, Samiyappan R, Arjunan G: Biocontrol of Macrophomina root rot of mungbean. Indian Phytopathol. 1993, 46: 379-382.
Google Scholar
De BK, Chattopadhya SB: Effect of potash on stem rot diseases of jute caused by Macrophomicna phaseolina. J Mycopathol Res. 1992, 30: 51-55.
Google Scholar
Aly AA, Abdel-Sattar MA, Omar MR, Abd-Elsalam KA: Differential antagonism of Trichoderma sp. against Macrophomina phaseolina. J Plant Protection Res. 2007, 47: 91-102.
Google Scholar
Khan SK: M. phaseolina as causal agent for charcoal rot of sunflower. Mycopath. 2007, 5: 111-118.
Google Scholar
Dinakaran D, Mohammed N: Identification of resistant sources to root rot of sesame caused by M. phaseolina (Tassi.) Goid. Sesame and Safflower Newsletter. 2001, 16: 68-71.
Google Scholar
Wyllie TD: Charcoal rot. Compendium of Soybean Diseases. Edited by: Sinclair JB, Backman PA. 1993, APS, St. Paul, 30-33. 3
Google Scholar
Sandhu A, Singh RD, Sandhu A: Factors influencing susceptibility of cowpea to M. phaseolina. J Mycol Plant Pathol. 1999, 29: 421-424.
Google Scholar
Short GE, Wyllie TD, Bristow PR: Survival of M. phaseolina in soil and residue of soybeans. Phytopathology. 1980, 70: 13-17. 10.1094/Phyto-70-13.
Article
Google Scholar
Mahmoud A, Budak H: First report of charcoal rot caused by M. phaseolina in sunflower in Turkey. Plant Dis. 2011, 95: 223-
Article
Google Scholar
Avilés M, Castillo S, Bascon J, Zea-Bonilla T, Martín-Sánchez PM, Pérez-Jiménez RM: First report of M. phaseolina causing crown and root rot of strawberry in Spain. Plant Pathol. 2008, 57: 382-
Article
Google Scholar
Khangura R, Aberra M: First reports of charcoal rot on canola caused by M. phaseolina in Western Australia. Plant Dis. 2009, 93: 666-
Article
Google Scholar
Gray FA, Kolp BJ, Mohamed MA: A disease survey of crops grown in the Bay Region of Somalia, East Africa. FAO Plant Prot Bull. 1990, 38: 39-47.
Google Scholar
Diourte M, Starr JL, Jeger MJ, Stack JP, Rosenow DT: Charcoal rot (Macrophomina phaseolina) resistance and the effects of water stress on disease development in sorghum. Plant Pathol. 1995, l44: 196-202.
Article
Google Scholar
Wrather JA, Anderson TR, Arsyad DM, Tan Y, Ploper LD, Porta-Puglia A, Ram HH, Yorinori JT: Soybean disease loss estimates for the top 10 soybean producing countries in 1998. Can J Plant Pathol. 2001, 23: 115-121. 10.1080/07060660109506918.
Article
Google Scholar
Wrather JA, Koenning SR, Anderson TR: Effect of diseases on soybean yields in the United States and Ontario (1999–2002). Online. Plant Health Progress. 2003, 10.1094/PHP-2003-0325-01-RV.
Google Scholar
Ammon V, Wyllie TD, Brown MF: An ultrastructural investigation of pathological alterations induced by M. phaseolina (Tassi) Goid. in seedlings of soybean, Glycine max (L.) Merril. Physiol. Plant Pathol. 1974, 4: 1-4.
Google Scholar
Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, Decaprio D, Gale LR, Gnerre S, Goswami RS, Hammond-Kosack K, Harris LJ, Hilburn K, Kennell JC, Kroken S, Magnuson JK, Mannhaupt G, Mauceli E, Mewes HW, Mitterbauer R, Muehlbauer G, et al: The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science. 2007, 317: 1400-1402. 10.1126/science.1143708.
Article
CAS
PubMed
Google Scholar
Lowe RGT, Howlett BJ: Indifferent, affectionate, or deceitful: Lifestyles and secretomes of fungi. PLoS Pathog. 2012, 8: e1002515-10.1371/journal.ppat.1002515.
Article
PubMed Central
CAS
PubMed
Google Scholar
Gough J, Karplus K, Hughey R, Chothia C: Assignment of homology to genome sequences using a library of hidden markov models that represent all proteins of known structure. J Mol Biol. 2001, 313: 903-919. 10.1006/jmbi.2001.5080.
Article
CAS
PubMed
Google Scholar
Kang S, Lebrun MH, Farrall L, Valent B: Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene. Mol Plant Microbe Interact. 2001, 14: 671-674. 10.1094/MPMI.2001.14.5.671.
Article
CAS
PubMed
Google Scholar
Hane JK, Oliver RP: RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences. BMC Bioinforma. 2008, 9: 478-10.1186/1471-2105-9-478.
Article
Google Scholar
Knogge W: Fungal Infection of Plants. Plant Cell. 1996, 8: 1711-1722.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kaur S, Dhillon GS, Brar SK, Chauhan VB: Carbohydrate degrading enzyme production by plant pathogenic mycelia and microsclerotia isolates of Macrophomina phaseolina through koji fermentation. Ind Crop Prod. 2012, 36: 140-148. 10.1016/j.indcrop.2011.08.020.
Article
CAS
Google Scholar
Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J, Helfenbein KG, Ramaiya P, Detter JC, Larimer F, Coutinho PM, Henrissat B, Berka R, Cullen D, Rokhsar D: Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat Biotechnol. 2004, 22: 695-700. 10.1038/nbt967.
Article
CAS
PubMed
Google Scholar
Winnenburg R, Urban M, Beacham A, Baldwin TK, Holland S, Lindeberg M, Hansen H, Rawlings C, Hammond-Kosack KE, Kohler J: PHI-base update: additions to the pathogen host interaction database. Nucleic Acids Res. 2008, 36: 572-576.
Article
Google Scholar
Morschhauser J: Regulation of multidrug resistance in pathogenic fungi. Fungal Genet Biol. 2010, 47: 94-106. 10.1016/j.fgb.2009.08.002.
Article
PubMed
Google Scholar
Beck J, Ripka S, Siegner A, Schiltz E, Schweizer E: The multifunctional 6-methylsalicylic acid synthase gene of Penicillium patulum. Its gene structure relative to that of other polyketide synthases. Eur J Biochem. 1990, 192: 487-498. 10.1111/j.1432-1033.1990.tb19252.x.
Article
CAS
PubMed
Google Scholar
Kulkarni RD, Thon MR, Pan H, Dean RA: Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea. Genome Biol. 2005, 6: R24-10.1186/gb-2005-6-3-r24.
Article
PubMed Central
PubMed
Google Scholar
Solomon PS, Tan KC, Sanchez P, Cooper RM, Oliver RP: The disruption of a Galpha subunit sheds new light on the pathogenicity of Stagonospora nodorum on wheat. Mol Plant Microbe Interact. 2004, 17: 456-466. 10.1094/MPMI.2004.17.5.456.
Article
CAS
PubMed
Google Scholar
Li L, Wright SJ, Krystofova S, Park G, Borkovich KA: Heterotrimeric G protein signaling in filamentous fungi. Annu Rev Microbiol. 2007, 61: 423-452. 10.1146/annurev.micro.61.080706.093432.
Article
CAS
PubMed
Google Scholar
Fang W, St Leger RJ: Mrt, a gene unique to fungi, encodes an oligosaccharide transporter and facilitates rhizosphere competency in Metarhizium robertsii. Plant Physiol. 2010, 154: 1549-1557. 10.1104/pp.110.163014.
Article
PubMed Central
CAS
PubMed
Google Scholar
Nelson DR: Cytochrome P450 and the individuality of species. Arch Biochem Biophys. 1999, 369: 1-10. 10.1006/abbi.1999.1352.
Article
CAS
PubMed
Google Scholar
Maloney AP, VanEtten HD: A gene from the fungal plant pathogen Nectria haematococca that encodes the phytoalexin detoxifying enzyme pisatin demethylase defines a new cytochrome P450 family. Mol Gen Genet. 1994, 243: 506-514. 10.1007/BF00284198.
Article
CAS
PubMed
Google Scholar
Suvarna K, Bartiss A, Wong B: Mannitol-1-phosphate dehydrogenase from Cryptococcus neoformans is a zinc-containing long-chain alcohol/polyol dehydrogenase. Microbiology. 2000, 146: 2705-2713.
Article
CAS
PubMed
Google Scholar
Duke SO, Vaughn KC: Lack of involvement of polyphenol oxidase in ortho-hydroxylation of phenolic compounds in mung bean seedlings. Physiol Plant. 1982, 54: 381-385. 10.1111/j.1399-3054.1982.tb00696.x.
Article
CAS
Google Scholar
Okoro1 IO, Osagie A, Asibor EO: Antioxidant and antimicrobial activities of polyphenols from ethnomedicinal plants of Nigeria. African J Biotechnol. 2010, 9: 2989-2993.
Google Scholar
John P, Morrissey , Osbourn AE: Fungal resistance to plant antibiotics as a mechanism of pathogenesis. Microbiol Mol Biol Rev. 1999, 63: 708-724.
Google Scholar
Wolpert TJ, Dunkle LD, Ciuffetti LM: Host-selective toxins and avirulence determinants: what’s in a name?. Annu Rev Phytopathol. 2002, 40: 251-285. 10.1146/annurev.phyto.40.011402.114210.
Article
CAS
PubMed
Google Scholar
Oide S, Moeder W, Krasnoff S, Gibson D, Haas H, Yoshioka K, Turgeon BG: NPS6, encoding a nonribosomal peptide synthetase involved in siderophore-mediated iron metabolism, is a conserved virulence determinant of plant pathogenic ascomycetes. Plant Cell. 2006, 18: 2836-2853. 10.1105/tpc.106.045633.
Article
PubMed Central
CAS
PubMed
Google Scholar
Panaccione DG, Scott-Craig JS, Pocard JA, Walton JD: A cyclic peptide synthetase gene required for pathogenicity of the fungus Cochliobolus carbonum on maize. Proc Natl Acad Sci USA. 1992, 89: 6590-6594. 10.1073/pnas.89.14.6590.
Article
PubMed Central
CAS
PubMed
Google Scholar
Böhnert HU, Fudal I, Dioh W, Tharreau D, Notteghem JL, Lebrun MH: A putative polyketide synthase/peptide synthetase from Magnaporthe grisea signals pathogen attack to resistant rice. Plant Cell. 2004, 16: 2499-2513. 10.1105/tpc.104.022715.
Article
PubMed Central
PubMed
Google Scholar
Gunde-Cimernam N, Zalar P, Hoog SD, Plemenitas A: Hypersaline waters in salterns – natural ecological niches for halophilic black yeasts. FEMS Microbiol Ecol. 2000, 32: 235-240.
Google Scholar
You MP, Colmer TD, Barbetti MJ: Salinity drives host reaction in Phaseolus vulgaris (common bean) to Macrophomina phaseolina. Funct Plant Biol. 2011, 38: 984-992. 10.1071/FP11137.
Article
CAS
Google Scholar
Herranz S, Rodríguez JM, Bussink HJ, Sánchez-Ferrero JC, Arst HN, Peñalva MA, Vincent O: Arrestin-related proteins mediate pH signaling in fungi. Proc Natl Acad Sci USA. 2005, 102: 12141-12146. 10.1073/pnas.0504776102.
Article
PubMed Central
CAS
PubMed
Google Scholar
Duran R, Cary JW, Calvo AM: Role of the osmotic stress regulatory pathway in morphogenesis and secondary metabolism in filamentous fungi. Toxins. 2010, 2: 367-381. 10.3390/toxins2040367.
Article
PubMed Central
CAS
PubMed
Google Scholar
Dixon KP, Xu JR, Smirnoff N, Talbot NJ: Independent signaling pathways regulate cellular turgor during hyperosmotic stress and appressorium mediated plant infection by the rice blast fungus Magnaporthe grisea. Plant Cell. 1999, 11: 2045-2058.
Article
PubMed Central
CAS
PubMed
Google Scholar
Gaulin E, Jauneau A, Villalba F, Rickauer M, Esquerré-Tugayé MT, Bottin A: The CBEL glycoprotein of Phytophthora parasitica var. nicotianae is involved in cell wall deposition and adhesion to cellulosic substrates. J Cell Sci. 2002, 115: 4565-4575. 10.1242/jcs.00138.
Article
CAS
PubMed
Google Scholar
Whiteford JR, Spanu PD: The hydrophobin HCf-1 of Cladosporium fulvum is required for efficient water-mediated dispersal of conidia. Fungal Genet Biol. 2001, 32: 159-168. 10.1006/fgbi.2001.1263.
Article
CAS
PubMed
Google Scholar
Kwon YH, Hoch HC, Aist JR: Initiation of appressorium formation in Uromyces appendiculatus: organization of the apex and the responses involving microtubules and apical vesicles. Can J Bot. 1991, 69: 2560-2573. 10.1139/b91-319.
Article
Google Scholar
Choi W, Dean RA: The adenylate cyclase gene MAC1 of Magnaporthe grisea controls appressorium formation and other aspects of growth and development. Plant Cell. 1997, 9: 1973-1983.
Article
PubMed Central
CAS
PubMed
Google Scholar
Xu J-R, Hamer JE: MAP kinase and cAMP signaling regulate infection structure formation and pathogenic growth in the rice blast fungus Magnaporthe grisea. Genes Dev. 1996, 10: 2696-706. 10.1101/gad.10.21.2696.
Article
CAS
PubMed
Google Scholar
Tan DHS, Sigler L, Gibas CFC, Fong IW: Disseminated fungal infection in a renal transplant recipient involving M. phaseolina and Scytalidium dimidiatum: case report and review of taxonomic changes among medically important members of the Botryosphaeriaceae. Med Mycol. 2008, 46: 285-292. 10.1080/13693780701759658.
Article
CAS
PubMed
Google Scholar
Ospina-Giraldo MD, Griffith JG, Laird EW, Mingora C: The CAZyome of Phytophthora spp.: A comprehensive analysis of the gene complement coding for carbohydrate-active enzymes in species of the genus Phytophthora. BMC Genomics. 2010, 11: 525-540. 10.1186/1471-2164-11-525.
Article
PubMed Central
PubMed
Google Scholar
Benčina M, Jakopič M, Friedrich J: High-molecular-weight genomic DNA isolation from Doratomyces microsporus and synthesis of a genomic DNA library. Acta Chim Slov. 2007, 54: 893-899.
Google Scholar
Li Y, Wang W, Du X, Yuan Q: An improved RNA isolation method for filamentous fungus Blakeslea trispora rich in polysaccharides. Appl Biochem Biotechnol. 2010, 160: 322-327. 10.1007/s12010-008-8289-x.
Article
CAS
PubMed
Google Scholar
Parra G, Bradnam K, Korf I: CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics. 2007, 23: 1061-1067. 10.1093/bioinformatics/btm071.
Article
CAS
PubMed
Google Scholar
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O: Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids Res. 2003, 31: 5654-5666. 10.1093/nar/gkg770.
Article
PubMed Central
CAS
PubMed
Google Scholar
Stanke M, Waack S: Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics. 2003, 19: 215-225. 10.1093/bioinformatics/btg1029.
Article
Google Scholar
Majoros WH, Pertea M, Salzberg SL: TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics. 2004, 20: 2878-2879. 10.1093/bioinformatics/bth315.
Article
CAS
PubMed
Google Scholar
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR: Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol. 2008, 9: R7-10.1186/gb-2008-9-1-r7.
Article
PubMed Central
PubMed
Google Scholar
Huang X, Adams MD, Zhou H, Kerlavage AR: A tool for analyzing and annotating genomic sequences. Genomics. 1997, 46: 37-45. 10.1006/geno.1997.4984.
Article
CAS
PubMed
Google Scholar
Zdobnov EM, Apweiler R: InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics. 2001, 17: 847-848. 10.1093/bioinformatics/17.9.847.
Article
CAS
PubMed
Google Scholar
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol. 1990, 215: 403-410.
Article
CAS
PubMed
Google Scholar
Lowe TM, Eddy SR: tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997, 25: 955-964.
Article
PubMed Central
CAS
PubMed
Google Scholar
Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T, Ussery DW: RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007, 35: 3100-3108. 10.1093/nar/gkm160.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL: Versatile and open software for comparing large genomes. Genome Biol. 2004, 5: R12-10.1186/gb-2004-5-2-r12.
Article
PubMed Central
PubMed
Google Scholar
Medema MH, Blin K, Cimermanci P, de Jager V, Zakrzewski P, Fischbach MA, Weber T, Takano E, Breitling R: antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acid Res. 2011, 39: 1-8. 10.1093/nar/gkq742.
Article
Google Scholar
Katoh K, Toh H: Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinforma. 2008, 9: 212-10.1186/1471-2105-9-212.
Article
Google Scholar
Castresana J: Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, 17: 540-552. 10.1093/oxfordjournals.molbev.a026334.
Article
CAS
PubMed
Google Scholar
Jones DT, Taylor WR, Thornton JM: The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci. 1992, 8: 275-282.
CAS
PubMed
Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S: MEGA5:Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol. 2011, 28: 2731-2739. 10.1093/molbev/msr121.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HA, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, Snetselaar K, McCann M, Pérez-Martín J, Feldbrügge M, Basse CW, Steinberg G, Ibeas JI, Holloman W, Guzman P, Farman M, Stajich JE, Sentandreu R, González-Prieto JM, Kennell JC, Molina L, Schirawski J, Mendoza-Mendoza A, Greilinger D, Münch K, Rössel N, Scherer M, Vrane M, Ladendorf O, Vincon VV, Fuchs U, Sandrock B, Meng S, Ho ECH, Cahill MJ, Boyce KJ, Klose J, Klosterman SJ, Deelstra HJ, Ortiz-Castellanos L, Li W, Sanchez-Alonso P, Schreier PH, Häuser-Hahn I, Vaupel M, Koopmann E, Friedrich G, Voss H, Schlüter T, Margolis J, Platt D, Swimmer C, Gnirke A, Chen F, Vysotskaia V, Mannhaupt G, Güldener U, Münsterkötter M, Haase D, Oesterheld M, Mewes HW, Mauceli EW, DeCaprio D, Wade CM, Butler J, Young S, Jaffe DB, Calvo S, Nusbaum C, Galagan J, Birren BW: Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature. 2006, 444: 97-101. 10.1038/nature05248.
Article
PubMed
Google Scholar
Gao Q, Jin K, Ying SH, Zhang Y, Xiao G, Shang Y, Duan Z, Hu X, Xie XQ, Zhou G, Peng G, Luo Z, Huang W, Wang B, Fang W, Wang S, Zhong Y, Ma LJ, St Leger RJ, Zhao GP, Pei Y, Feng MG, Xia Y, Wang C: Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum. PLoS Genet. 2011, 7: e1001264-10.1371/journal.pgen.1001264.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ispolatov I, Yuryev A, Mazo I, Maslov S: Binding properties and evolution of homodimers in protein–protein interaction networks. Nucleic Acid Res. 2005, 33: 3629-3635. 10.1093/nar/gki678.
Article
PubMed Central
CAS
PubMed
Google Scholar
D’Souza DT, Tiwari R, Sah AK, Raghukumar C: Enhanced production of laccase by a marine fungus during treatment of colored effluent and synthetic dyes. Enzyme Microb Technol. 2006, 38: 504-511. 10.1016/j.enzmictec.2005.07.005.
Article
Google Scholar
Okino LK, Machado KMG, Fabric C, Bonomi VLR: Ligninolytic activity of tropical rainforest basidiomycetes. World J Microbiol Biotech. 2000, 16: 889-893. 10.1023/A:1008983616033.
Article
CAS
Google Scholar
Archibald FS: A new assay for lignin-type peroxidases employing the dye azure B. Appl Environ Microbiol. 1992, 58: 3110-3116.
PubMed Central
CAS
PubMed
Google Scholar