Khan MA, Duffy B, Gessler C, Patocchi A: QTL mapping of fire blight resistance in apple. Mol Breed. 2006, 17: 299-306.
Article
Google Scholar
Khan MA, Duffy B, Durel CE, Denancé C, Kellerhals M, Patocchi A, Gessler C: Development of markers linked to the 'Fiesta' 7 major QTL for fire blight resistance and their application for marker-assisted selection. Genome. 2007, 50: 568-577.
Article
CAS
PubMed
Google Scholar
Bus VGM, Chagné D, Bassett HCM, Bowatte D, Calenge F, Celton J-M, Durel CE, Malone MT, Patocchi A, Ranatunga AC, Rikkerink EHA, Tustin DS, Zhou J, Gardiner SE: Genome mapping of three major resistance genes to woolly apple aphid (Eriosoma lanigerum Hausm.). Tree Genet Genomes. 2008, 4: 233-236.
Article
Google Scholar
Le Roux PM, Khan MA, Broggini GA, Duffy B, Gessler C, Patocchi A: Mapping of quantitative trait loci for fire blight resistance in the apple cultivars 'Florina' and 'Nova Easygro'. Genome. 2010, 53: 710-722.
Article
CAS
PubMed
Google Scholar
Kenis K, Keulemans J: Study of tree architecture of apple (Malus x domestica Borkh.) by QTL analysis of growth traits. Mol Breed. 2007, 19: 193-208.
Article
CAS
Google Scholar
Segura V, Durel C, Costes E: Dissecting apple tree architecture into genetic, ontogenetic and environmental effects: QTL mapping. Tree Genet Genomes. 2009, 5: 165-179.
Article
Google Scholar
Katrien K, Johan K, Mark WD: Identification and stability of QTLs for fruit quality traits in apple. Tree Genet Genomes. 2008, 4: 647-661.
Article
Google Scholar
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R: The genome of the domesticated apple (Malus x domestica Borkh.). Nat Genet. 2010, 42: 833-839.
Article
CAS
PubMed
Google Scholar
Newcomb RD, Crowhurst RN, Gleave AP, Rikkerink EH, Allan AC, Beuning LL, Bowen JH, Gera E, Jamieson KR, Janssen BJ, Laing WA, McArtney S, Nain B, Ross GS, Snowden KC, Souleyre EJ, Walton EF, Yauk YK: Analysis of expressed sequence tags from apple. Plant Physiol. 2006, 141: 147-166.
Article
PubMed Central
PubMed
Google Scholar
Gasic K, Gonzalez DO, Thimmapuram J, Liu L, Malnoy M, Gong G, Han Y, Vodkin LO, Aldwinckle HS, Carroll NJ, Orvis KS, Goldsbrough P, Clifton S, Pape D, Fulton L, Martin J, Theising B, Wisniewski ME, Fazio G, Feltus FA, Korban SS: Comparative analysis and functional annotation of a large expressed sequence tag collection of apple. Plant Genome. 2009, 2: 23-38.
Article
CAS
Google Scholar
Han Y, Gasic K, Marron B, Beever JE, Korban SS: A BAC-based physical map of the apple genome. Genomics. 2007, 89: 630-637.
Article
CAS
PubMed
Google Scholar
Maliepaard C, Alston FH, van Arkel G, Brown LM, Chevreau E, Dunemann F, Evans KM, Gardiner S, Guilford P, van Heusden AW, Janse J, Laurens F, Lynn JR, Manganaris AG, den Nijs APM, Periam N, Rikkerink E, Roche P, Ryder C, Sansavini S, Schmidt H, Tartarini S, Verhaegh JJ, Vrielink-van Ginkel M, King CJ: Aligning male and female linkage maps of apple (Malus pumila Mill.) using multi-allelic markers. Theor Appl Genet. 1998, 97: 60-73.
Article
CAS
Google Scholar
Guilford P, Prakash S, Zhu J, Rikkerink E, Gardiner S, Basset H, Forster R: Microsatellites in Malus x domestica (apple): abundance, polymorphism and cultivar identification. Theor Appl Genet. 1997, 94: 249-254.
Article
CAS
Google Scholar
Gianfranceschi L, Seglias N, Tarchini R, Komjanc M, Gessler C: Simple sequence repeats for the genetic analysis of apple. Theor Appl Genet. 1998, 96: 1069-1076.
Article
CAS
Google Scholar
Liebhard R, Gianfranceschi L, Koller B, Ryder CD, Tarchini R, Van de Weg E, Gessler C: Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.). Mol Breed. 2002, 10: 217-241.
Article
CAS
Google Scholar
Kenis K, Keulemans J: Genetic linkage maps of two apple cultivars (Malus x domestica Borkh.) based on AFLP and microsatellite markers. Mol Breed. 2005, 15: 205-219.
Article
CAS
Google Scholar
Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C, Patocchi A: Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genet Genomes. 2006, 2: 202-224.
Article
Google Scholar
Han Y, Zheng D, Vimolmangkang S, Khan MA, Beever JE, Korban SS: Integration of physical and genetic maps in apple confirms whole-genome and segmental duplications in the apple genome. J Exp Bot. 2011, 62: 5117-5130.
Article
PubMed Central
CAS
PubMed
Google Scholar
Dirlewanger E, Graziano E, Joobeur T, Garriga-Calderé F, Cosson P, Howad W, Arús P: Comparative mapping and marker-assisted selection in Rosaceae fruit crops. Proc Natl Acad Sci USA. 2004, 101: 9891-9896.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cuadrado A, Cardoso M, Jouve N: Physical organization of simple sequence repeats (SSRs) in Triticeae: structural, functional and evolutionary implications. Cytogenet Genome Res. 2008, 120: 210-219.
Article
CAS
PubMed
Google Scholar
Celton JM, Tustin DS, Chagné D, Gardiner SE: Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genet Genomes. 2009, 5: 93-107.
Article
Google Scholar
Ellegren H: Microsatellites: simple sequences with complex evolution. Nat Rev Genet. 2004, 5: 435-445.
Article
CAS
PubMed
Google Scholar
Lawson MJ, Zhang L: Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes. Genome Biol. 2006, 7: R14-
Article
PubMed Central
PubMed
Google Scholar
Cavagnaro PF, Senalik DA, Yang L, Simon PW, Harkins TT, Kodira CD, Huang S, Weng Y: Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.). BMC Genomics. 2010, 11: 569-
Article
PubMed Central
PubMed
Google Scholar
Morgante M, Hanafey M, Powell W: Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet. 2002, 30: 194-200.
Article
CAS
PubMed
Google Scholar
Katti MV, Ranjekar PK, Gupta VS: Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol. 2001, 18: 1161-1167.
Article
CAS
PubMed
Google Scholar
Tamanna A, Khan AU: Mapping and analysis of simple sequence repeats in the Arabidopsis thaliana genome. Bioinformation. 2005, 1: 64-68.
Article
PubMed Central
PubMed
Google Scholar
Lai CWJ, Yu Q, Hou S, Skelton RL, Jones MR, Lewis KLT, Murray J, Eustice M, Guan P, Agbayani R, Moore PH, Ming R, Presting GG: Analysis of papaya BAC end sequences reveals first insights into the organization of a fruit tree genome. Mol Genet Genomics. 2006, 276: 1617-4615.
Article
Google Scholar
Shultz JL, Kazi S, Bashir R, Afzal JA, Lightfoot DA: The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. Theor Appl Genet. 2007, 114: 1081-1090.
Article
CAS
PubMed
Google Scholar
Sonah H, Deshmukh RK, Sharma A, Singh VP, Gupta DK, Gacche RN, Rana JC, Singh NK, Sharma TR: Genome-wide distribution and organization of microsatellites in plants: an insight into marker development in Brachypodium. PLoS One. 2011, 6: e21298-
Article
PubMed Central
CAS
PubMed
Google Scholar
Mun JH, Kim DJ, Choi HK, Gish J, Debellé F, Mudge J, Denny R, Endré G, Saurat O, Dudez AM, Kiss GB, Roe B, Young ND, Cook DR: Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical maps. Genetics. 2006, 172: 2541-2555.
Article
PubMed Central
CAS
PubMed
Google Scholar
Liebhard R, Koller B, Gianfranceschi L, Gessler C: Creating a saturated reference map for the apple (Malus × domestica Borkh.) genome. Theor Appl Genet. 2003, 106: 1497-1508.
CAS
PubMed
Google Scholar
N’Diaye A, Van de Weg WE, Kodde LP, Koller B, Dunemann F, Thiermann M, Tartarini S, Gennari F, Durel CE: Construction of an integrated consensus map of the apple genome based on four mapping populations. Tree Genet Genomes. 2008, 4: 727-743.
Article
Google Scholar
Conner PJ, Brown SK, Weeden NF: Randomly amplified polymorhic DNA-based genetic linkage maps of three apple cultivars. J Am Soc Hortic Sci. 1997, 122: 350-359.
CAS
Google Scholar
Troggio M, Malacarne G, Coppola G, Segala C, Cartwright DA, Pindo M, Stefanini M, Mank R, Moroldo M, Morgante M, Grando MS, Velasco R: A dense single-nucleotide polymorphism-based genetic linkage map of grapevine (Vitis vinifera L.) anchoring Pinot Noir bacterial artificial chromosome contigs. Genetics. 2007, 176: 2637-2650.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cervera MT, Storme V, Ivens B, Gusmão J, Liu B, Hostyn V, Van Slycken M, Van Montague M, Boerjan W: Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics. 2001, 158: 787-809.
PubMed Central
CAS
PubMed
Google Scholar
Vogl C, Xu S: Multipoint mapping of viability and segregation distorting loci using molecular markers. Genetics. 2000, 155: 1439-1447.
PubMed Central
CAS
PubMed
Google Scholar
Vinatzer BA, Patocchi A, Tartarini S, Gianfranceschi L, Sansavini S, Gessler C: Isolation of two microsatellite markers from BAC clones of the Vf scab resistance. Plant Breed. 2004, 123: 321-326.
Article
CAS
Google Scholar
Gao Z, Van De Weg WE: The Vf gene for scab resistance in apple is linked to sub-lethal genes. Euphytica. 2006, 151: 123-132.
Article
CAS
Google Scholar
Kasha KJ, Kao KN: High frequency haploid production in barley (Hordeum vulgare L.). Nature. 1970, 225: 874-876.
Article
CAS
PubMed
Google Scholar
Savolainen O, Kärkkäinen K, Kuittinen H: Estimating numbers of embryonic lethals in conifers. Heredity. 1992, 69: 308-314.
Article
Google Scholar
Boudehri K, Bendahmane A, Cardinet G, Troadec C, Moing A, Dirlewanger E: Phenotypic and fine genetic characterization of the D locus controlling fruit acidity in peach. BMC Plant Biol. 2009, 9: 59-
Article
PubMed Central
PubMed
Google Scholar
Kenis K, Keulemans J, Davey M: Identification and stability of QTLs for fruit quality traits in apple. Tree Genet Genomes. 2008, 4: 647-661.
Article
Google Scholar
Zhang Y, Li P, Cheng L: Developmental changes of carbohydrates, organic acids, amino acids, and phenolic compounds in ‘Honeycrisp’ apple flesh. Food Chem. 2010, 123: 1013-1018.
Article
CAS
Google Scholar
Liebhard R, Kellerhals M, Pfammatter W, Jertmini M, Gessler C: Mapping quantitative physiological traits in apple (Malus x domestica Borkh.). Plant Mol Biol. 2003, 52: 511-526.
Article
CAS
PubMed
Google Scholar
Zhang Q, Li J, Zhao Y, Korban SS, Han Y: Evaluation of genetic diversity in Chinese wild apple species along with apple cultivars using SSR markers. Plant Mol Biol Rep. 2012, 30: 539-546.
Article
CAS
Google Scholar
Van Ooijen JW: JoinMap® 4, Software for the calculation of genetic linkage maps in experimental populations. 2006, Wageningen, Netherlands: Kyazma B.V
Google Scholar
Van Ooijen JW, Boer MP, Jansen RC, Maliepaard C: MapQTL 4.0; Software for the calculation of QTL positions on genetic maps. 2002, Wageningen: Plant Research International B.V
Google Scholar
Morvai M, Molnár-Per I: Simultaneous gas chromatographic quantitation of sugars and acids in citrus fruits, pears, bananas, grapes, apples and tomatoes. Chromatogr. 1992, 34: 502-504.
Article
CAS
Google Scholar