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Table 2 Responsive transcription factors during the process of low temperature treatment in cassava apical shoots

From: Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress

Family

Probe Name

Description

4 h/0 h

9 h/0 h

9 h/4 h

AGI Locus

E Value

   

log2 Ratio

  

AP2-EREBP

CUST_18605

RAP2.11

2.96

4.59

-

AT5G19790

1.40E-06

 

CUST_2332

AP2 domain transcription factor

-

4.02

-

AT4G34410

1.60E-23

 

CUST_14955

ERF2 (ethylene response transcription activator)

-

-

3.35

AT5G47220

1.50E-33

 

CUST_20765

AP2 domain transcription factor

-

2.02

-

AT1G21910

4.70E-29

 

CUST_5161

RAP2.4

-

-

1.15

AT1G78080

8.30E-32

 

CUST_2192

ERF9 transcription repressor

-1.51

-

-

AT5G44210

1.00E-21

AUX/IAA

CUST_13515

IAA16 transcription factor

-

-1.55

-1.10

AT3G04730

4.30E-77

ABI3-VP1

CUST_3699

B3 family transcriptional factor

-

-

1.27

AT4G01580

1.80E-17

bZIP

CUST_10706

ABA-responsive element binding protein 3

-

-1.18

-

AT3G56850

1.20E-35

 

CUST_18065

ABA-responsive element binding protein 3

-

-1.22

-

AT3G56850

2.30E-20

C2H2

CUST_4530

ZFP5 (ZINC FINGER PROTEIN 5)

-

1.50

-

AT1G10480

9.70E-19

 

CUST_12461

C2H2-type zinc finger ZAT-12 like

-

-

2.41

AT2G28710

1.60E-25

C3H

CUST_18218

zinc finger (CCCH-type) family protein

-

-1.05

-

AT4G29190

5.00E-77

G2-like

CUST_13281

PCL1 (PHYTOCLOCK 1)

-

1.62

-

AT3G46640

1.60E-21

 

CUST_3593

PCL1 (PHYTOCLOCK 1)

-

1.55

-

AT3G46640

4.90E-35

GRAS

CUST_13235

GAI transcription factor

-

-1.07

-

AT1G14920

2.00E-108

 

CUST_7817

scarecrow transcription factor

-

-1.09

-

AT5G66770

1.50E-39

 

CUST_12751

SCL5 transcription factor

-

-1.39

-

AT1G50600

2.90E-10

 

CUST_10812

scarecrow transcription factor

-

-1.52

-

AT5G66770

8.90E-38

 

CUST_6129

scarecrow-like transcription factor 9

-

-

-1.00

AT2G37650

2.90E-15

HSF

CUST_18574

heat shock transcription factor A8

-

2.14

1.74

AT1G67970

1.20E-17

 

CUST_14028

heat shock transcription factor C1

-

1.35

1.54

AT3G24520

9.90E-77

JUMONJI

CUST_15293

jumonji domain transcription factor

-

1.85

-

AT4G00990

3.50E-09

LIM

CUST_14929

WLIM1 transcription factor

-

1.21

-

AT1G10200

2.20E-86

MYB

CUST_9065

MYB73

-

-

2.01

AT4G37260

9.60E-25

 

CUST_6759

myb family transcription factor

-

-1.49

-

AT1G49010

9.30E-41

MYB-related

CUST_10013

CPC (CAPRICE) transcription factor

-

-1.68

-1.04

AT2G46410

4.10E-12

NAC

CUST_17347

NAC domain transcription factor

-

-1.34

-

AT5G13180

2.60E-14

Sigma70-like

CUST_14809

SIGMA FACTOR B

-

-1.03

-

AT1G08540

5.30E-20

TCP

CUST_7714

PTF1 (PLASTID TRANSCRIPTION FACTOR 1)

-

-1.26

-

AT3G02150

2.00E-12

WRKY

CUST_16901

WRKY7 transcription factor

-

-1.50

-

AT4G24240

2.60E-34

Unclassified

CUST_19860

salt tolerance during germination 1

-1.38

-1.17

-

AT4G31720

5.10E-09

  1. Notes: Positive and negative values of Log2 Ratio are either up- or down-regulated genes in the three pair-comparisons. No significant fold changes are indicated as "-".
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BMC Genomics

ISSN: 1471-2164

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