Thorisson GA, Muilu J, Brookes AJ: Genotype-phenotype databases: challenges and solutions for the post-genomic era. Nat Rev Genet. 2009, 10: 9-18.
Article
CAS
PubMed
Google Scholar
Amberger J, Bocchini CA, Scott AF, Hamosh A: McKusick’s Online Mendelian Inheritance in Man (OMIM). Nucleic Acids Res. 2009, 37: D793-D796.
Article
PubMed Central
CAS
PubMed
Google Scholar
Laulederkind SJF, Tutaj M, Shimoyama M, Hayman GT, Lowry TF, Nigam R, Petri V, Smith JR, Wang S-J, De Pons J, Dwinell MR, Jacob HJ: Ontology searching and browsing at the Rat Genome Database. Database. 2012, 2012: bas016-
Article
PubMed Central
PubMed
Google Scholar
Davis AP, King BL, Mockus S, Murphy CG, Saraceni-Richards C, Rosenstein M, Wiegers T, Mattingly CJ: The Comparative Toxicogenomics Database: update 2011. Nucleic Acids Res. 2011, 39: D1067-D1072.
Article
PubMed Central
CAS
PubMed
Google Scholar
Banerjee-Basu S, Packer A: SFARI Gene: an evolving database for the autism research community. Dis Model Mech. 2010, 3: 133-135.
Article
PubMed
Google Scholar
Lill CM, Roehr JT, McQueen MB, Kavvoura FK, Bagade S, Schjeide B-MM, Schjeide LM, Meissner E, Zauft U, Allen NC, Liu T, Schilling M, Anderson KJ, Beecham G, Berg D, Biernacka JM, Brice A, DeStefano AL, Do CB, Eriksson N, Factor SA, Farrer MJ, Foroud T, Gasser T, Hamza T, Hardy JA, Heutink P, Hill-Burns EM, Klein C, Latourelle JC, Maraganore DM, Martin ER, Martinez M, Myers RH, Nalls MA, Pankratz N, Payami H, Satake W, Scott WK, Sharma M, Singleton AB, Stefansson K, Toda T, Tung JY, Vance J, Wood NW, Zabetian CP, Young P, Tanzi RE, Khoury MJ, Zipp F, Lehrach H, Ioannidis JPA, Bertram L: Comprehensive research synopsis and systematic meta-analyses in Parkinson’s disease genetics: The PDGene database. PLoS Genet. 2012, 8: e1002548-
Article
PubMed Central
CAS
PubMed
Google Scholar
Bertram L, McQueen MB, Mullin K, Blacker D, Tanzi RE: Systematic meta-analyses of Alzheimer disease genetic association studies: the AlzGene database. Nat Genet. 2007, 39: 17-23.
Article
CAS
PubMed
Google Scholar
Lill CM, Roehr JT, McQueen MB, Bagade S, Schjeide BM, Zipp F, Bertram L: The MSGene Database. Alzheimer Research Forum. Available at http://www.msgene.org/
Zhang L, Chang S, Li Z, Zhang K, Du Y, Ott J, Wang J: ADHDgene: a genetic database for attention deficit hyperactivity disorder. Nucleic Acids Res. 2011, 40: D1003-D1009.
Article
PubMed Central
PubMed
Google Scholar
Liu H, Liu W, Liao Y, Cheng L, Liu Q, Ren X, Shi L, Tu X, Wang QK, Guo A-Y: CADgene: a comprehensive database for coronary artery disease genes. Nucleic Acids Res. 2010, 39: D991-D996.
Article
PubMed Central
PubMed
Google Scholar
Shevell M, Goldowitz D: Inter-disciplinary research in the pediatric neurosciences: the NeuroDevNet model, Introduction. Semin Pediatr Neurol. 2011, 18: 1-
Article
PubMed
Google Scholar
Portales-Casamar E, Evans A, Wasserman W, Pavlidis P: The NeuroDevNet Neuroinformatics Core. Semin Pediatr Neurol. 2011, 18: 17-20.
Article
PubMed
Google Scholar
Zoubarev A, Hamer KM, Keshav KD, McCarthy EL, Santos JRC, Rossum TV, McDonald C, Hall A, Wan X, Lim R, Gillis J, Pavlidis P: Gemma: A resource for the re-use, sharing and meta-analysis of expression profiling data. Bioinformatics. 2012, 28: 2272-2273.
Article
PubMed Central
CAS
PubMed
Google Scholar
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Federhen S, Feolo M, Fingerman IM, Geer LY, Helmberg W, Kapustin Y, Krasnov S, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Karsch-Mizrachi I, Ostell J, Panchenko A, Phan L, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, Wilbur WJ, Yaschenko E, Ye J: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2012, 40: D13-25.
Article
PubMed Central
CAS
PubMed
Google Scholar
Schriml LM, Arze C, Nadendla S, Chang Y-WW, Mazaitis M, Felix V, Feng G, Kibbe WA: Disease Ontology: a backbone for disease semantic integration. Nucleic Acids Res. 2012, 40: D940-946.
Article
PubMed Central
CAS
PubMed
Google Scholar
Robinson PN, Mundlos S: The human phenotype ontology. Clin Genet. 2010, 77: 525-534.
Article
CAS
PubMed
Google Scholar
Smith CL, Eppig JT: The mammalian phenotype ontology: enabling robust annotation and comparative analysis. Wiley Interdiscip Rev Syst Biol Med. 2009, 1: 390-399.
Article
PubMed Central
CAS
PubMed
Google Scholar
Lu Z: PubMed and beyond: a survey of web tools for searching biomedical literature. Database (Oxford). 2011, 2011: baq036-
Article
Google Scholar
Brinkman RR, Courtot M, Derom D, Fostel JM, He Y, Lord P, Malone J, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone S-A, Soldatova LN, Stoeckert CJ, Turner JA, Zheng J: Modeling biomedical experimental processes with OBI. J Biomed Semantics. 2010, 1 (Suppl 1): S7-
Article
PubMed Central
PubMed
Google Scholar
Ioannidis JPA, Boffetta P, Little J, O’Brien TR, Uitterlinden AG, Vineis P, Balding DJ, Chokkalingam A, Dolan SM, Flanders WD, Higgins JPT, McCarthy MI, McDermott DH, Page GP, Rebbeck TR, Seminara D, Khoury MJ: Assessment of cumulative evidence on genetic associations: interim guidelines. Int J Epidemiol. 2008, 37: 120-132.
Article
PubMed
Google Scholar
Khoury MJ, Bertram L, Boffetta P, Butterworth AS, Chanock SJ, Dolan SM, Fortier I, Garcia-Closas M, Gwinn M, Higgins JPT, Janssens ACJW, Ostell J, Owen RP, Pagon RA, Rebbeck TR, Rothman N, Bernstein JL, Burton PR, Campbell H, Chockalingam A, Furberg H, Little J, O’Brien TR, Seminara D, Vineis P, Winn DM, Yu W, Ioannidis JPA: Genome-wide association studies, field synopses, and the development of the knowledge base on genetic variation and human diseases. Am J Epidemiol. 2009, 170: 269-279.
Article
PubMed Central
PubMed
Google Scholar
Ioannidis JPA: Effect of formal statistical significance on the credibility of observational associations. Am J Epidemiol. 2008, 168: 374-383. discussion 384–390
Article
PubMed
Google Scholar
Stephens M, Balding DJ: Bayesian statistical methods for genetic association studies. Nat Rev Genet. 2009, 10: 681-690.
Article
CAS
PubMed
Google Scholar
Abel O, Powell JF, Andersen PM, Al-Chalabi A: ALSoD: A user-friendly online bioinformatics tool for amyotrophic lateral sclerosis genetics. Hum Mutat. 2012, 33: 1345-1351.
Article
CAS
PubMed
Google Scholar
ID Database Home. http://gfuncpathdb.ucdenver.edu/iddrc/iddrc/home.php,
Tan NCK, Berkovic SF: The Epilepsy Genetic Association Database (epiGAD): analysis of 165 genetic association studies, 1996–2008. Epilepsia. 2010, 51: 686-689.
Article
PubMed
Google Scholar
Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story M-A, Smith B: The National Center for Biomedical Ontology. J Am Med Inform Assoc. 2012, 19: 190-195.
Article
PubMed Central
PubMed
Google Scholar
Gillis J, Pavlidis P: The Impact of Multifunctional Genes on “Guilt by Association” Analysis. PLoS One. 2011, 6: e17258-
Article
PubMed Central
CAS
PubMed
Google Scholar
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G: Gene ontology: tool for the unification of biology, The Gene Ontology Consortium. Nat Genet. 2000, 25: 25-29.
Article
PubMed Central
CAS
PubMed
Google Scholar
Gefen A, Cohen R, Birk OS: Syndrome to gene (S2G): in-silico identification of candidate genes for human diseases. Hum Mutat. 2010, 31: 229-236.
Article
CAS
PubMed
Google Scholar
Van Triest HJW, Chen D, Ji X, Qi S, Li-Ling J: PhenOMIM: an OMIM-based secondary database purported for phenotypic comparison. Conf Proc IEEE Eng Med Biol Soc. 2011, 2011: 3589-3592.
PubMed
Google Scholar
Wall DP, Pivovarov R, Tong M, Jung J-Y, Fusaro VA, DeLuca TF, Tonellato PJ: Genotator: A disease-agnostic tool for genetic annotation of disease. BMC Med Genomics. 2010, 3: 50-
Article
PubMed Central
PubMed
Google Scholar
Groth P, Pavlova N, Kalev I, Tonov S, Georgiev G, Pohlenz H-D, Weiss B: PhenomicDB: a new cross-species genotype/phenotype resource. Nucleic Acids Res. 2007, 35: D696-699.
Article
PubMed Central
CAS
PubMed
Google Scholar
Yu W, Clyne M, Khoury MJ, Gwinn M: Phenopedia and Genopedia: Disease-Centered and Gene-Centered Views of the Evolving Knowledge of Human Genetic Associations. Bioinformatics. 2010, 26: 145-146.
Article
PubMed Central
CAS
PubMed
Google Scholar
Becker KG, Barnes KC, Bright TJ, Wang SA: The Genetic Association Database. Nat Genet. 2004, 36: 431-432.
Article
CAS
PubMed
Google Scholar
Li MJ, Wang P, Liu X, Lim EL, Wang Z, Yeager M, Wong MP, Sham PC, Chanock SJ, Wang J: GWASdb: a database for human genetic variants identified by genome-wide association studies. Nucleic Acids Res. 2012, 40: D1047-1054.
Article
PubMed Central
CAS
PubMed
Google Scholar
Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, Manolio TA: Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc Natl Acad Sci U S A. 2009, 106: 9362-9367.
Article
PubMed Central
CAS
PubMed
Google Scholar