Table 3 List of the top 20 longest contigs originated from the 454 run of brain-hypophysis-gonad axis tissues of turbot ( S . maximus )
Contig number | Length | No. reads | Average coverage per nucleotide | % GC | Annotation | E-value | Accession number | Database |
|---|---|---|---|---|---|---|---|---|
358 | 5,012 | 584 | 33.2 | 43.4 | Cytochrome c oxidase subunit 3 | 1.00E-127 | UniRef90_C7S7B2 | Uniref90 |
4,333 | 4,486 | 133 | 8.3 | 45.7 | Adrenodoxin-like protein mitochondrial | 2.00E-60 | UniRef90_Q08C57 | Uniref90 |
2,251 | 4,042 | 146 | 10.5 | 46.1 | SSRU rRNA Cavia porcellus | 3.00E-13 | AAKN02033512 | SSU |
425 | 4,010 | 293 | 23.3 | 52.1 | Aspartate/tyrosine/aromatic aminotransferase | 1.00E-101 | YDR111c | COG |
1,894 | 3,992 | 212 | 13.6 | 44.3 | unknown | |||
2,165 | 3,964 | 158 | 11.0 | 50.4 | Ubiquitin carboxyl-terminal hydrolase | 0 | UniRef90_B7Z855 | Uniref90 |
762 | 3,896 | 464 | 32.4 | 48.6 | Proliferation-associated 2G4b | 1.00E-165 | dre:323462 | KEGG |
1,956 | 3,797 | 182 | 13.8 | 47.5 | Novel protein (Zgc:55794) | 0 | UniRef90_Q1LWK5 | Uniref90 |
9,828 | 3,757 | 54 | 4.3 | 44.1 | FAM3C | 9.00E-57 | UniRef90_B5X712 | Uniref90 |
12,120 | 3,753 | 63 | 4.3 | 47.0 | Zgc:165446 protein | 1.00E-65 | UniRef90_A6H8R7 | Uniref90 |
3,201 | 3,707 | 128 | 10.3 | 46.6 | Novel protein similar to WDR44 | 0 | dre:569045 | KEGG |
2,212 | 3,700 | 116 | 9.1 | 38.6 | Osteocalcin | 2.00E-12 | UniRef90_D2XEB2 | Uniref90 |
1,541 | 3,673 | 181 | 14.7 | 48.3 | Cell division cycle | 1.00E-105 | UniRef90_Q6PFU4 | Uniref90 |
2,167 | 3,623 | 173 | 12.3 | 45.1 | M-phase phosphoprotein 10 | 1.00E-148 | dre:323426 | KEGG |
280 | 3,613 | 287 | 27.3 | 44.9 | NADH dehydrogenase subunit 5 | 0 | UniRef90_C7S7B6 | Uniref90 |
4,193 | 3,611 | 85 | 6.2 | 41.3 | Suppressor of tumorigenicity 7 protein | 1.00E-34 | UniRef90_Q1RLU8 | Uniref90 |
644 | 3,571 | 531 | 42.1 | 46.3 | RAD1 homolog | 1.00E-145 | UniRef90_Q6P2T4 | Uniref90 |
1,248 | 3,569 | 127 | 10.8 | 43.8 | 60S ribosomal protein | 2.00E-45 | UniRef90_P61513 | Uniref90 |
2,845 | 3,555 | 106 | 8.1 | 43.4 | NF-kappaB repressing factor | 1.00E-79 | gga:422370 | KEGG |
5,634 | 3,550 | 84 | 5.8 | 47.1 | WD repeat domain phosphoinositide | 0 | UniRef90_Q5MNZ6 | Uniref90 |