Ferlay J, Shin HR, Bray F, Forman D, Mathers C, Parkin DM: Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008. International journal of cancer Journal international du cancer. 2010, 127 (12): 2893-2917. 10.1002/ijc.25516.
Article
CAS
PubMed
Google Scholar
Perou CM, Sorlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA: Molecular portraits of human breast tumours. Nature. 2000, 406 (6797): 747-752. 10.1038/35021093.
Article
CAS
PubMed
Google Scholar
Osborne CK, Bardou V, Hopp TA, Chamness GC, Hilsenbeck SG, Fuqua SA, Wong J, Allred DC, Clark GM, Schiff R: Role of the estrogen receptor coactivator AIB1 (SRC-3) and HER-2/neu in tamoxifen resistance in breast cancer. J Natl Cancer Inst. 2003, 95 (5): 353-361. 10.1093/jnci/95.5.353.
Article
CAS
PubMed
Google Scholar
Holm C, Rayala S, Jirstrom K, Stal O, Kumar R, Landberg G: Association between Pak1 expression and subcellular localization and tamoxifen resistance in breast cancer patients. J Natl Cancer Inst. 2006, 98 (10): 671-680. 10.1093/jnci/djj185.
Article
CAS
PubMed
Google Scholar
Michalides R, Griekspoor A, Balkenende A, Verwoerd D, Janssen L, Jalink K, Floore A, Velds A, van’t Veer L, Neefjes J: Tamoxifen resistance by a conformational arrest of the estrogen receptor alpha after PKA activation in breast cancer. Cancer Cell. 2004, 5 (6): 597-605. 10.1016/j.ccr.2004.05.016.
Article
CAS
PubMed
Google Scholar
Redmond AM, Bane FT, Stafford AT, McIlroy M, Dillon MF, Crotty TB, Hill AD, Young LS: Coassociation of estrogen receptor and p160 proteins predicts resistance to endocrine treatment; SRC-1 is an independent predictor of breast cancer recurrence. Clinical cancer research: an official journal of the American Association for Cancer Research. 2009, 15 (6): 2098-2106. 10.1158/1078-0432.CCR-08-1649.
Article
CAS
Google Scholar
Shou J, Massarweh S, Osborne CK, Wakeling AE, Ali S, Weiss H, Schiff R: Mechanisms of tamoxifen resistance: increased estrogen receptor-HER2/neu cross-talk in ER/HER2-positive breast cancer. J Natl Cancer Inst. 2004, 96 (12): 926-935. 10.1093/jnci/djh166.
Article
CAS
PubMed
Google Scholar
Molina MA, Codony-Servat J, Albanell J, Rojo F, Arribas J, Baselga J: Trastuzumab (herceptin), a humanized anti-Her2 receptor monoclonal antibody, inhibits basal and activated Her2 ectodomain cleavage in breast cancer cells. Cancer Res. 2001, 61 (12): 4744-4749.
CAS
PubMed
Google Scholar
Lupien M, Meyer CA, Bailey ST, Eeckhoute J, Cook J, Westerling T, Zhang X, Carroll JS, Rhodes DR, Liu XS: Growth factor stimulation induces a distinct ER(alpha) cistrome underlying breast cancer endocrine resistance. Genes Dev. 2010, 24 (19): 2219-2227. 10.1101/gad.1944810.
Article
PubMed Central
CAS
PubMed
Google Scholar
Hurtado A, Holmes KA, Ross-Innes CS, Schmidt D, Carroll JS: FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nat Genet. 2011, 43 (1): 27-33. 10.1038/ng.730.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ross-Innes CS, Stark R, Teschendorff AE, Holmes KA, Ali HR, Dunning MJ, Brown GD, Gojis O, Ellis IO, Green AR: Differential oestrogen receptor binding is associated with clinical outcome in breast cancer. Nature. 2012, 481 (7381): 389-393.
PubMed Central
CAS
PubMed
Google Scholar
Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, Orlov YL, Velkov S, Ho A, Mei PH: An oestrogen-receptor-alpha-bound human chromatin interactome. Nature. 2009, 462 (7269): 58-64. 10.1038/nature08497.
Article
PubMed Central
CAS
PubMed
Google Scholar
Zwart W, Theodorou V, Kok M, Canisius S, Linn S, Carroll JS: Oestrogen receptor-co-factor-chromatin specificity in the transcriptional regulation of breast cancer. EMBO J. 2011, 30 (23): 4764-4776. 10.1038/emboj.2011.368.
Article
PubMed Central
CAS
PubMed
Google Scholar
Adli M, Zhu J, Bernstein BE: Genome-wide chromatin maps derived from limited numbers of hematopoietic progenitors. Nat Methods. 2010, 7 (8): 615-618. 10.1038/nmeth.1478.
Article
PubMed Central
CAS
PubMed
Google Scholar
Shankaranarayanan P, Mendoza-Parra MA, Walia M, Wang L, Li N, Trindade LM, Gronemeyer H: Single-tube linear DNA amplification (LinDA) for robust ChIP-seq. Nat Methods. 2011, 8 (7): 565-567. 10.1038/nmeth.1626.
Article
CAS
PubMed
Google Scholar
O’Neill LP, VerMilyea MD, Turner BM: Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations. Nat Genet. 2006, 38 (7): 835-841. 10.1038/ng1820.
Article
PubMed
Google Scholar
Schmidt D, Wilson MD, Spyrou C, Brown GD, Hadfield J, Odom DT: ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. Methods. 2009, 48 (3): 240-248. 10.1016/j.ymeth.2009.03.001.
Article
PubMed Central
CAS
PubMed
Google Scholar
Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, Brodsky AS, Keeton EK, Fertuck KC, Hall GF: Genome-wide analysis of estrogen receptor binding sites. Nat Genet. 2006, 38 (11): 1289-1297. 10.1038/ng1901.
Article
CAS
PubMed
Google Scholar
Gyorffy B, Lanczky A, Eklund AC, Denkert C, Budczies J, Li Q, Szallasi Z: An online survival analysis tool to rapidly assess the effect of 22,277 genes on breast cancer prognosis using microarray data of 1,809 patients. Breast Cancer Res Treat. 2010, 123 (3): 725-731. 10.1007/s10549-009-0674-9.
Article
PubMed
Google Scholar
Adli M, Bernstein BE: Whole-genome chromatin profiling from limited numbers of cells using nano-ChIP-seq. Nat Protoc. 2011, 6 (10): 1656-1668. 10.1038/nprot.2011.402.
Article
PubMed Central
CAS
PubMed
Google Scholar
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W: Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008, 9 (9): R137-10.1186/gb-2008-9-9-r137.
Article
PubMed Central
PubMed
Google Scholar
He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, Zhang Y, Xu K, Ni M, Lupien M: Nucleosome dynamics define transcriptional enhancers. Nat Genet. 2010, 42 (4): 343-347. 10.1038/ng.545.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ji X, Li W, Song J, Wei L, Liu XS: CEAS: cis-regulatory element annotation system. Nucleic Acids Res. 2006, 34 (Web Server issue): W551-W554.
Article
PubMed Central
CAS
PubMed
Google Scholar
van Diest PJ: No consent should be needed for using leftover body material for scientific purposes. For. BMJ. 2002, 325 (7365): 648-651. 10.1136/bmj.325.7365.648.
Article
PubMed
Google Scholar