Table 1 General genome features of the four studied pseudomonad PGPR
| Â | GP72 | Pf-5 | M18 | A1501 |
|---|---|---|---|---|
Size (base pairs) | 6,663,241 | 7,074,893 | 6,327,754 | 4,567,418 |
G+C content (%) | 63.13% | 63.30% | 66.50% | 63.88% |
Protein-coding genes | 6091 | 6142 | 5690 | 4135 |
No. of protein-coding genes with function prediction | 5062 (83.11%) | 4492 (73.14%) | 4115 (72.32%) | 3227 (78.04%) |
No. of protein-coding genes without function prediction | 16.89% | 26.86% | 27.68% | 21.96% |
No. of protein-coding genes connected to KEGG Orthology | 53.77% | 51.84% | 53.95% | 57.61% |
No. of protein-coding genes with COGs | 82.66% | 79.27% | 83.88% | 80.58% |
No. of protein-coding genes coding signal peptides | 24.48% | 24.28% | 25.17% | 22.03% |
No. of protein-coding genes coding transmembrane proteins | 23.71% | 23.58% | 23.71% | 24.76% |
RNA genes | 85 | 115 | 79 | 102 |
rRNA genes (5S rRNA, 16S rRNA, 23S rRNA) | 4 (2, 1, 1) | 16 (6, 5, 5) | 13 (5, 4, 4) | 13 (4,4,5) |
tRNA genes | 61 | 71 | 61 | 61 |
Other RNA genes | 20 | 28 | 5 | 28 |
Conserved CDS | 602 | 558 | 572 | 545 |
Strain-specific CDS | 994 | 1116 | 1351 | 1195 |