Table 2 Gene clusters present in Xcaw12879 but absent in XccA306

1

XCAW_01029 to XCAW_01069

hypothetical proteins, RhsA family protein, transcriptional regulator, integrase, adenine specific DNA methylase, type III restriction enzyme: res subunit, ATP dependent exoDNAse, thermonulease

2

XCAW_01117 to XCAW_01151

Some present in X. campestris pv. campestris ATCC 33913

transcriptional regulator, phage-related tail proteins, TCS response sensor and regulator, chitinase, Zn peptidase, transcriptional repressor, protein -glutamate methylesterase

3

XCAW_01571 to XCAW_01582

Some present in X. campestris pv. campestris str. 8004

phage related proteins, hypothetical protein

4

XCAW_01620 to XCAW_01726

Homologous to Acidovorax sp. JS42 and X. campestris pv. campestris str. 8004

transposases, hypothetical proteins, type II restriction enzyme: methylase subunit, phage related regulatory proteins, chromosome partitioning related protein, soluble lytic murein transglycosylase, VirB6 protein

5

XCAW_04292 to XCAW_04303

Homologous to X. oryzae pv. oryzicola BLS256

lipopolysaccharide biosynthesis genes

6

XCAW_04482 to XCAW_04496

transposases, hypothetical proteins, transcriptional repressor, polymerase V subunit

7

XCAW_04519 to XCAW_04545

Homologous to X. oryzae pv. oryzae PXO99A

phage related proteins, transcriptional regulator, transposases, hypothetical proteins

8

XCAW_a00001 to XCAW_a00017

Plasmid partition protein, conjugal transfer protein, hypothetical proteins

9

XCAW_b00002 to XACW_b00018

Transposases, plasmid stability proteins, avirulence protein, hypothetical proteins

10

XCAW_b00048 to XACW_b00056

Plasmid mobilization proteins, transposases, hypothetical proteins