Chan JW, Goodwin PH: The molecular genetics of virulence of Xanthomonas campestris. Biotechnol Adv. 1999, 17: 489-508. 10.1016/S0734-9750(99)00025-7.
Article
CAS
PubMed
Google Scholar
Civerolo EL: Bacterial canker disease of citrus. J Rio Grande Val Hort Soc. 1984, 37: 127-145.
Google Scholar
Stall RE, Civerolo EL: Research relating to the recent outbreak of citrus canker in Florida. Annu Rev Phytopathol. 1991, 29: 399-420. 10.1146/annurev.py.29.090191.002151.
Article
CAS
PubMed
Google Scholar
Sun X, Stall RE, Jones JB, Cubero J, Gottwald TR, Graham JH, Dixon WH, Schubert TS, Chaloux PH, Stromberg VK: Detection and characterization of a new strain of citrus canker bacteria from Key/Mexican Lime and alemow in south Florida. Plant Dis. 2004, 88: 1179-1188. 10.1094/PDIS.2004.88.11.1179.
Article
CAS
Google Scholar
Verniere C, Hartung JS, Pruvost OP, Civerolo EL, Alvarez AM, Maestri P, Luisetti J: Characterization of phenotypically distinct strains of Xanthomonas axonopodis pv. citri from Southwest Asia. Eur J Plant Pathol. 1998, 104: 477-487. 10.1023/A:1008676508688.
Article
Google Scholar
Schubert TS, Rizvi SA, Sun X, Gottwald TR, Graham JH, Dixon WN: Meeting the challenge of eradicating citrus canker in Florida - again. Plant Dis. 2001, 85: 17-
Article
Google Scholar
Rybak MA, Minsavage GV, Stall RE, Jones JB: Identification of Xanthomonas citri ssp. citri host specificity genes in a heterologous expression host. Mol Plant Pathol. 2009, 10: 249-262. 10.1111/j.1364-3703.2008.00528.x.
Article
CAS
PubMed
Google Scholar
da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM: Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature. 2002, 417: 459-463. 10.1038/417459a.
Article
PubMed
Google Scholar
Jalan N, Aritua V, Kumar D, Yu F, Jones JB, Graham JH, Setubal JC, Wang N: Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1, which causes citrus bacterial spot disease and related strains provides insights into virulence and host specificity. J Bacteriol. 2011, 193: 6342-6357. 10.1128/JB.05777-11.
Article
PubMed Central
CAS
PubMed
Google Scholar
Moreira LM, Almeida NF, Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE, de Oliveira JC: Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. BMC Genomics. 2010, 11: 238-10.1186/1471-2164-11-238.
Article
PubMed Central
PubMed
Google Scholar
Jalan N, Kumar D, Yu F, Jones JB, Graham JH, Wang N: Complete genome sequence of Xanthomonas citri subsp. citri strain Aw12879, a restricted host-range citrus canker-causing bacterium. Genome Announce. 1: 3. e00235-13-10.1128/genomeA.00235-13.
Wengelnik K, Van Den Ackerveken G, Bonas U: HrpG a key hrp regulatory protein of Xanthomonas campestris pv. vesicatoria is homologous to two-component response regulators. Mol Plant Microbe Interact. 1996, 9: 704-712. 10.1094/MPMI-9-0704.
Article
CAS
PubMed
Google Scholar
Midha S, Ranjan M, Sharma V, Pinnaka AK, Patil PB: Genome sequence of Xanthomonas citri pv. mangiferaeindicae strain LMG 941. J Bacteriol. 2012, 194: 3031-10.1128/JB.00433-12.
Article
PubMed Central
CAS
PubMed
Google Scholar
Sharma V, Midha S, Ranjan M, Pinnaka AK, Patil PB: Genome sequence of Xanthomonas axonopodis pv. punicae strain LMG 859. J Bacteriol. 2012, 194: 2395-10.1128/JB.00181-12.
Article
PubMed Central
CAS
PubMed
Google Scholar
Rodriguez-R LM, Grajales A, Arrieta-Ortiz ML, Salazar C, Restrepo S, Bernal A: Genomes-based phylogeny of the genus Xanthomonas. BMC Microbial. 2012, 12: 43-10.1186/1471-2180-12-43.
Article
Google Scholar
Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M: ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 2005, 34: 32-36.
Article
Google Scholar
Al-Saadi A, Reddy JD, Duan YP, Brunings AM, Yuan Q, Gabriel DW: All five host-range variants of Xanthomonas citri carry one pthA homolog with 17.5 repeats that determines pathogenicity on citrus, but none determine host-range variation. Mol Plant Microbe Interact. 2007, 20: 934-943. 10.1094/MPMI-20-8-0934.
Article
CAS
PubMed
Google Scholar
Qian W, Jia Y, Ren SX, He YQ, Feng JX, Lu LF, Sun Q, Ying G, Tang DJ, Tang H: Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res. 2005, 15: 757-767. 10.1101/gr.3378705.
Article
PubMed Central
CAS
PubMed
Google Scholar
Semenova E, Nagornykh M, Pyatnitskiy M, Artamonova II, Severinov K: Analysis of CRISPR system function in plant pathogen Xanthomonas oryzae. FEMS Microbiol Lett. 2009, 296: 110-116. 10.1111/j.1574-6968.2009.01626.x.
Article
CAS
PubMed
Google Scholar
Büttner D, Bonas U: Regulation and secretion of Xanthomonas virulence factors. FEMS Microbiol Rev. 2010, 34: 107-133. 10.1111/j.1574-6976.2009.00192.x.
Article
PubMed
Google Scholar
Escalon A, Javegny S, Vernière C, Noël LD, Vital K, Poussier S, Hajri A, Baureau T, Pruvost O, Arlat M, Gagnevin L: Variations in the type III effector repertoires, pathological phenotypes and host range of Xanthomonas citri pv. citri pathotypes. Mol Plant Pathol. 2013, 14: 483-496. 10.1111/mpp.12019.
Article
CAS
PubMed
Google Scholar
Kearney B, Staskawicz BJ: Widespread distribution and fitness contribution of Xanthomonas campestris avirulence gene avrBs2. Nature. 1990, 346: 385-386. 10.1038/346385a0.
Article
CAS
PubMed
Google Scholar
Alegria M, Souza D, Andrade M, Docena C, Khater L, Ramos C, da Silva A, Farah C: Identification of new protein-protein interactions involving the products of the chromosome and plasmid-encoded type IV secretion loci of the phytopathogen Xanthomonas axonopodis pv. citri. J Bacteriol. 2005, 187: 2315-2325. 10.1128/JB.187.7.2315-2325.2005.
Article
PubMed Central
CAS
PubMed
Google Scholar
Noël L, Thieme F, Nennstiel D, Bonas U: Two novel type III-secreted proteins of Xanthomonas campestris pv. vesicatoria are encoded within the hrp pathogenicity island. J Bacteriol. 2002, 184: 1340-1348. 10.1128/JB.184.5.1340-1348.2002.
Article
PubMed Central
PubMed
Google Scholar
Thieme F, Szczesny R, Urban A, Kirchner O, Hause G, Bonas U: New type III effectors from Xanthomonas campestris pv. vesicatoria trigger plant reactions dependent on a conserved N-myristoylation motif. Mol Plant Microbe Interact. 2007, 20: 1250-1261. 10.1094/MPMI-20-10-1250.
Article
CAS
PubMed
Google Scholar
Nimchuk ZL, Fisher EJ, Desveaux D, Chang JH, Dangl JL: The HopX (AvrPphE) family of Pseudomonas syringae type III effectors require a catalytic triad and a novel N-terminal domain for function. Mol Plant Microbe Interact. 2007, 20: 346-357. 10.1094/MPMI-20-4-0346.
Article
CAS
PubMed
Google Scholar
Roden JA, Belt B, Ross JB, Tachibana T, Vargas J, Mudgett MB: A genetic screen to isolate type III effectors translocated into pepper cells during Xanthomonas infection. Proc Natl Acad Sci U S A. 2004, 101: 16624-16629. 10.1073/pnas.0407383101.
Article
PubMed Central
CAS
PubMed
Google Scholar
Thieme F: Genombasierte Identifizierung neuer potentieller Virulenzfaktoren von Xanthomonas campestris pv. vesicatoria. 2008, Halle-Wittenberg: Mathematisch-Naturwissenschaftlich-Technische Fakultät der Martin-Luther Universität, PhD thesis
Google Scholar
Furutani A, Takaoka M, Sanada H, Noguchi Y, Oku T, Tsuno K, Ochiai H, Tsuge S: Identification of novel type III secretion effectors in Xanthomonas oryzae pv. oryzae. Mol Plant Microbe Interact. 2009, 22: 96-106. 10.1094/MPMI-22-1-0096.
Article
CAS
PubMed
Google Scholar
Jiang Y: The rice XA21-binding protein 25 is an ankyrin repeat-containing protein and required for XA21-mediated disease resistance. 2007, University of Florida: Department of Plant Pathology, PhD thesis
Google Scholar
Metz M, Dahlbeck D, Morales CQ, Al Sady B, Clark ET, Staskawicz BJ: The conserved Xanthomonas campestris pv. vesicatoria effector protein XopX is a virulence factor and suppresses host defense in Nicotiana benthamiana. Plant J. 2005, 41: 801-814. 10.1111/j.1365-313X.2005.02338.x.
Article
CAS
PubMed
Google Scholar
Guidot A, Prior P, Schoenfeld J, Carrère S, Genin S, Boucher C: Genomic structure and phylogeny of the plant pathogen Ralstonia solanacearum inferred from gene distribution analysis. J Bacteriol. 2007, 189: 377-387. 10.1128/JB.00999-06.
Article
PubMed Central
CAS
PubMed
Google Scholar
Petnicki-Ocwieja T, Schneider DJ, Tam VC, Chancey ST, Shan L, Jamir Y, Schechter LM, Janes MD, Buell CR, Tang X, Collmer A, Alfano JR: Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000. Proc Natl Acad Sci U S A. 2002, 99: 7652-7657. 10.1073/pnas.112183899.
Article
PubMed Central
CAS
PubMed
Google Scholar
Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Büttner D, Caldana C, Gaigalat L, Goesmann A, Kay S: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. J Bacteriol. 2005, 187: 7254-7266. 10.1128/JB.187.21.7254-7266.2005.
Article
PubMed Central
CAS
PubMed
Google Scholar
Mukaihara T, Tamura N, Iwabuchi M: Genome-wide identification of large repertoire of Ralstonia solanacearum type III effector proteins by a new functional screen. Mol Plant Microbe Interact. 2010, 23: 251-262. 10.1094/MPMI-23-3-0251.
Article
CAS
PubMed
Google Scholar
Lorenz C, Kirchner O, Egler M, Stuttmann J, Bonas U, Buttner D: HpaA from Xanthomonas is a regulator of type III secretion. Mol Microbiol. 2008, 69: 344-360. 10.1111/j.1365-2958.2008.06280.x.
Article
CAS
PubMed
Google Scholar
Park DS, Hyun JW, Park YJ, Kim JS, Kang HW, Hahn JH, Go SJ: Sensitive and specific detection of Xanthomonas axonopodis pv. citri by PCR using pathovar specific primers based on hrpW gene sequences. Microbiol Res. 2006, 161: 145-149. 10.1016/j.micres.2005.07.005.
Article
CAS
PubMed
Google Scholar
Kim JG, Li X, Roden JA, Taylor KW, Aakre CD, Su B, Lalonde S, Kirik A, Chen Y, Baranage G: Xanthomonas T3S effector XopN suppresses PAMP-triggered immunity and interacts with a tomato atypical receptor-like kinase and TFT1. Plant Cell. 2009, 21: 1305-1323. 10.1105/tpc.108.063123.
Article
PubMed Central
CAS
PubMed
Google Scholar
White FF, Potnis N, Jones JB, Koebnik R: The type III effectors of Xanthomonas. Mol Plant Pathol. 2009, 10: 749-766. 10.1111/j.1364-3703.2009.00590.x.
Article
CAS
PubMed
Google Scholar
Astua-Monge G, Minsavage GV, Stall RE, Davis MJ, Bonas U, Jones JB: Resistance of tomato and pepper to T3 strains of Xanthomonas campestris pv. vesicatoria is specified by a plant-inducible avirulence gene. Mol Plant Microbe Interact. 2000, 13: 911-921. 10.1094/MPMI.2000.13.9.911.
Article
CAS
PubMed
Google Scholar
Noël L, Thieme F, Nennstiel D, Bonas U: cDNA-AFLP analysis unravels a genome-wide HrpG-regulon in the plant pathogen Xanthomonas campestris pv. vesicatoria. Mol Microbiol. 2001, 41: 1271-1281. 10.1046/j.1365-2958.2001.02567.x.
Article
PubMed
Google Scholar
Swarup S, Yang Y, Kingsley MT, Gabriel DW: A Xanthomonas citri pathogenicity gene, pthA, pleiotropically encodes gratuitous avirulence on nonhosts. Mol Plant Microbe Interact. 1992, 5: 204-213. 10.1094/MPMI-5-204.
Article
CAS
PubMed
Google Scholar
Boch J, Bonas U: Xanthomonas AvrBs3 type family-type III effectors: discovery and function. Phytopathology. 2010, 48: 419-436. 10.1146/annurev-phyto-080508-081936.
Article
CAS
Google Scholar
Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, Kay S, Lahaye T, Nickstadt A, Bonas U: Breaking the code of DNA binding specificity of TAL-type III effectors. Science. 2009, 326: 1509-1512. 10.1126/science.1178811.
Article
CAS
PubMed
Google Scholar
Haas BJ, Chin M, Nusbaum C, Birren BW, Livny J: How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?. BMC Genomics. 2012, 13: 734-10.1186/1471-2164-13-734.
Article
PubMed Central
CAS
PubMed
Google Scholar
Patil PB, Bogdanove AJ, Sonti RV: The role of horizontal transfer in the evolution of a highly variable lipopolysaccharide biosynthesis locus in xanthomonads that infect rice, citrus and crucifers. BMC Evol Biol. 2007, 7: 243-10.1186/1471-2148-7-243.
Article
PubMed Central
PubMed
Google Scholar
Kingsley MT, Gabriel DW, Marlow GC, Roberts P: The opsX Locus of Xanthomonas campestris affects host range and biosynthesis of lipopolysaccharide and extracellular polysaccharide. J Bacteriol. 1993, 175: 5839-5850.
PubMed Central
CAS
PubMed
Google Scholar
Krylov VN: The role of horizontal gene transfer by bacteriophages in the origin of pathogenic bacteria. Russ J Genet. 2003, 5: 483-504.
Article
Google Scholar
Garavaglia BS, Thomas L, Zimaro T, Gottig N, Daurelio LD, Ndimba B, Orellano EG, Ottado J, Gehring C: A plant natriuretic peptide-like molecule of the pathogen Xanthomonas axonopodis pv. citri causes rapid changes in the proteome of its citrus host. BMC Plant Biol. 2010, 10: 51-10.1186/1471-2229-10-51.
Article
PubMed Central
PubMed
Google Scholar
Gottig N, Garavaglia BS, Garofalo CG, Daurelio LD, Valentine A, Gehring C, Orellano EG, Ottado J: Xanthomonas axonopodis pv. citri uses a plant natriuretic peptide-like protein to modify host homeostasis. Proc Natl Acad Sci U S A. 2008, 105: 18631-18636. 10.1073/pnas.0810107105.
Article
PubMed Central
CAS
PubMed
Google Scholar
Backert S, Meyer TF: Type IV secretion systems and their effectors in bacterial pathogenesis. Curr Opin Microbiol. 2006, 9: 207-217. 10.1016/j.mib.2006.02.008.
Article
CAS
PubMed
Google Scholar
Astua-Monge G, Feritas-Astua J, Bacocina G, Roncoletta J, Carvalho SA, Machado MA: Expression profiling of virulence and pathogenecity related genes of Xanthomonas axonopodis pv. citri. J Bacteriol. 2005, 187: 1201-1205. 10.1128/JB.187.3.1201-1205.2005.
Article
PubMed Central
CAS
PubMed
Google Scholar
Schulte R, Bonas U: A Xanthomonas pathogenicity locus is induced by sucrose and sulfur-containing amino acids. Plant Cell. 1992, 4: 79-86.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wengelnik K, Bonas U: HrpXv, an AraC-type regulator, activates expression of five of the six loci in the hrp cluster of Xanthomonas campestris pv. vesicatoria. Mol Plant Microbe Interact. 1996, 12: 3462-3489.
Google Scholar
Guo Y, Figueiredo F, Jones J, Wang N: HrpG and HrpX play global roles in coordinating different virulence traits of Xanthomonas axonopodis pv. citri. Mol Plant Microbe Interact. 2011, 24: 649-661. 10.1094/MPMI-09-10-0209.
Article
CAS
PubMed
Google Scholar
Lee SW, Jeong KS, Han SW, Lee SE, Phee BK, Hahn TR, Ronald P: The Xanthomonas oryzae pv. oryzae PhoPQ two component system is required for AvrXA21 activity, hrpG expression and virulence. J Bacteriol. 2008, 190: 2183-2197. 10.1128/JB.01406-07.
Article
PubMed Central
CAS
PubMed
Google Scholar
Yan Q, Wang W: High-throughput screening and analysis of genes of Xanthomonas citri subsp. citri involved in citrus canker symptom development. Mol Plant Microbe Interact. 2012, 25: 69-84. 10.1094/MPMI-05-11-0121.
Article
CAS
PubMed
Google Scholar
Li J, Wang N: The wxacO gene of Xanthomonas citri ssp. citri encodes a protein with a role in lipopolysaccharide biosynthesis, biofilm formation, stress tolerance and virulence. Mol Plant Pathol. 2011, 12: 381-396. 10.1111/j.1364-3703.2010.00681.x.
Article
PubMed
Google Scholar
Rigano L, Siciliano F, Enrique R, Sendín L, Filippone P, Torres P, Qüesta J, Dow J, Castagnaro A, Vojnov A, Marano M: Biofilm formation, epiphytic fitness, and canker development in Xanthomonas axonopodis pv. citri. Mol Plant Microbe Interact. 2007, 20: 1222-1230. 10.1094/MPMI-20-10-1222.
Article
CAS
PubMed
Google Scholar
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R: Clustal W and clustal X version 2.0. Bioinformatics. 2007, 23: 2947-2948. 10.1093/bioinformatics/btm404.
Article
CAS
PubMed
Google Scholar
Marchais A, Naville M, Bohn C, Bouloc P, Gautheret D: Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles. Genome Res. 2009, 19: 1084-1092. 10.1101/gr.089714.108.
Article
PubMed Central
CAS
PubMed
Google Scholar
Touchon M, Barbier P, Bernardet JF, Loux V, Vacherie B, Barbe V, Rocha EPC, Duchaud E: Complete genome sequence of the fish pathogen Flavobacterium branchiophilum. Appl Environ Microbiol. 2011, 77: 7656-7662. 10.1128/AEM.05625-11.
Article
PubMed Central
CAS
PubMed
Google Scholar
Grissa I, Vergnaud G, Pourcel C: CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 2007, 35: W52-W57. 10.1093/nar/gkm360. Web Server issue
Article
PubMed Central
PubMed
Google Scholar
Kurtz SA, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL: Versatile and open software for comparing large genomes. Genome Biol. 2004, 5 (2): 12-10.1186/gb-2004-5-2-r12.
Article
Google Scholar
Filiatrault MJ, Stodghill PV, Bronstein PA, Moll S, Lindeberg M, Grills G, Schweitzer P, Wang W, Schroth GP, Luo S: Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs and antisense activity. J Bacteriol. 2010, 192: 2359-2372. 10.1128/JB.01445-09.
Article
PubMed Central
CAS
PubMed
Google Scholar
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B: Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Meth. 2008, 5: 621-628. 10.1038/nmeth.1226.
Article
CAS
Google Scholar
Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Royal Stat Soc. 1995, 67: 289-300.
Google Scholar
Livak KJ, Schmittgen TD: Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods. 2001, 25: 402-408. 10.1006/meth.2001.1262.
Article
CAS
PubMed
Google Scholar
Hildebrand DC: Pectate and pectin gels for differentiation of Pseudomonas sp. and other bacterial plant pathogens. Phytopathology. 1971, 61: 7-
Google Scholar