Li JG: The litchi. 2008, Beijing: China Agriculture Press
Google Scholar
Li JG: Chapter 2. Litchi. Southern China Fruits Cultivation. Edited by: Chen JZ. 2011, Beijing: Chinese Agriculture Press
Google Scholar
Wall MM: Ascorbic acid and mineral composition of longan (Dimocarpus longan), lychee (Litchi chinensis) and rambutan (Nephelium lappaceum) cultivars grown in Hawaii. J Food Compos Anal. 2006, 19: 655-663. 10.1016/j.jfca.2005.12.001.
Article
CAS
Google Scholar
Noh JS, Park CH, Yokozawa T: Treatment with oligonol, a low-molecular polyphenol derived from lychee fruit, attenuates diabetes-induced hepatic damage through regulation of oxidative stress and lipid metabolism. Br J Nutr. 2011, 106: 1013-1022. 10.1017/S0007114511001322.
Article
CAS
PubMed
Google Scholar
Wang Z, Gerstein M, Snyder M: RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 2009, 10: 57-63. 10.1038/nrg2484.
Article
PubMed Central
CAS
PubMed
Google Scholar
Anisimov SV: Serial Analysis of Gene Expression (SAGE): 13 years of application in research. Curr Pharm Biotechnol. 2008, 9: 338-350. 10.2174/138920108785915148.
Article
CAS
PubMed
Google Scholar
Surget-Groba Y, Montoya-Burgos JI: Optimization of de novo transcriptome assembly from next-generation sequencing data. Genome Res. 2010, 20: 1432-1440. 10.1101/gr.103846.109.
Article
PubMed Central
CAS
PubMed
Google Scholar
Zenoni S, Ferrarini A, Giacomelli E, Xumerle L, Fasoli M, Malerba G, Bellin D, Pezzotti M, Delledonne M: Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq. Plant Physiol. 2010, 152: 1787-1795. 10.1104/pp.109.149716.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ono NN, Britton MT, Fass JN, Nicolet CM, Lin DW, Tian L: Exploring the transcriptome landscape of pomegranate fruit peel for natural product biosynthetic gene and SSR marker discovery. J Integr Plant Biol. 2011, 53: 800-813. 10.1111/j.1744-7909.2011.01073.x.
Article
CAS
PubMed
Google Scholar
Feng C, Chen M, Xu CJ, Bai L, Yin XR, Li X, Allan AC, Ferguson IB, Chen KS: Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq. BMC Genomics. 2012, 13: 19-10.1186/1471-2164-13-19.
Article
PubMed Central
CAS
PubMed
Google Scholar
Tang Q, Ma XJ, Mo CM, Wilson IW, Song C, Zhao H, Yang YF, Fu W, Qiu DY: An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis. BMC Genomics. 2011, 12: 343-10.1186/1471-2164-12-343.
Article
PubMed Central
CAS
PubMed
Google Scholar
Stern RA, Gazit S: The reproductive biology of the lychee. Hort Rev. 2002, 28: 393-453.
Google Scholar
Mitra SK, Pereira LS, Pathak PK, Majumdar D: Fruit abscission pattern of lychee cultivars. Acta Hort. 2005, 665: 215-218.
Article
Google Scholar
Yuan RC, Huang HB: Litchi fruit abscission: its patterns, effect of shading and relation to endogenous abscisic acid. Scientia Hort. 1988, 36: 281-292. 10.1016/0304-4238(88)90063-5.
Article
CAS
Google Scholar
Huang XM, Huang HB, Li JG, Wang HC, Gao FF: Why do detached litchi fruit senesce more rapidly?. Acta Hort. 2001, 558: 217-220.
Article
Google Scholar
Lakso AN, Wünsche JN, Palmer JW, Corelli Grappadelli L: Measurement and modeling of carbon balance of the apple tree. Hortscience. 1999, 34: 1040-1047.
Google Scholar
Polomski RF, Barden JA, Byers RE, Wolf DD: Apple fruit nonstructural carbohydrates and abscission as influenced by shade and terbacil. J Amer Soc Hort Sci. 1988, 113: 506-511.
CAS
Google Scholar
Zibordi M, Domingos S, Grappadelli LC: Thinning apples via shading: an appraisal under field conditions. J Hort Sci Biotech. 2009, 84: 138-144.
Google Scholar
Morandi B, Zibordi M, Losciale P, Manfrini L, Pierpaoli E, Grappadelli LC: Shading decreases the growth rate of young apple fruit by reducing their phloem import. Sci Hortic-Amsterdam. 2011, 127: 347-352. 10.1016/j.scienta.2010.11.002.
Article
Google Scholar
McArtney S, White M, Latter I, Campbell J: Individual and combined effects of shading and thinning chemicals on abscission and dry-matter accumulation of ‘Royal Gala’ apple fruit. J Hort Sci Biotechnol. 2004, 79: 441-448.
CAS
Google Scholar
Kolarič J, Pleško IM, Tojnko S, Stopar M: Apple fruitlet ethylene evolution and MdACO1, MdACS5A, and MdACS5B expression after application of naphthaleneacetic acid, 6-benzyladenine, ethephon, or shading. Hortscience. 2011, 46: 1381-1386.
Google Scholar
Zhu H, Dardick CD, Beers EP, Callanhan AM, Xia R, Yuan RC: Transcriptomics of shading-induced and NAA-induced abscission in apple (Malus domestica) reveals a shared pathway involving reduced photosynthesis, alterations in carbohydrate transport and signaling and hormone crosstalk. BMC Plant Biol. 2011, 11: 138-10.1186/1471-2229-11-138.
Article
PubMed Central
PubMed
Google Scholar
Zhou CJ, Lakso AN, Robinson TL, Gan SS: Isolation and characterization of genes associated with shade-induced apple abscission. Mol Genet Genomics. 2008, 280: 83-92. 10.1007/s00438-008-0348-z.
Article
CAS
PubMed
Google Scholar
Dal Cin V, Barbaro E, Danesin M, Murayama H, Velasco R, Ramina A: Fruitlet abscission: a cDNA-AFLP approach to study genes differentially expressed during shedding of immature fruits reveals the involvement of a putative auxin hydrogen symporter in apple (Malus domestica L. Borkh). Gene. 2009, 442: 26-36. 10.1016/j.gene.2009.04.009.
Article
CAS
PubMed
Google Scholar
Botton A, Eccher G, Forcato C, Ferrarini A, Begheldo M, Zermiani M, Moscatello S, Battistelli A, Velasco R, Ruperti B: Signaling pathways mediating the induction of apple fruitlet abscission. Plant Physiol. 2011, 155: 185-208. 10.1104/pp.110.165779.
Article
PubMed Central
CAS
PubMed
Google Scholar
Agustí J, Merelo P, Cercós M, Tadeo FR, Talón M: Ethylene-induced differential gene expression during abscission of citrus leaves. J Exp Bot. 2008, 59: 2717-2733. 10.1093/jxb/ern138.
Article
PubMed Central
PubMed
Google Scholar
Meir S, Philosoph-Hadas S, Sundaresan S, Selvaraj KSV, Burd S, Ophir R, Kochanek B, Reid MS, Jiang CZ, Lers A: Microarray analysis of the abscission-related transcriptome in the tomato flower abscission zone in response to auxin depletion. Plant Physiol. 2010, 154: 1929-1956. 10.1104/pp.110.160697.
Article
PubMed Central
CAS
PubMed
Google Scholar
Gil-Amado JA, Gomez-Jimenez MC: Transcriptome analysis of mature fruit abscission control in olive. Plant Cell Physiol. 2013, 54: 244-269. 10.1093/pcp/pcs179.
Article
CAS
PubMed
Google Scholar
Veitch NJ, Johnson PC, Trivedi U, Terry S, Wildridge D, MacLeod A: Digital gene expression analysis of two life cycle stages of the human-infective parasite. Trypanosoma brucei gambiense reveals differentially expressed clusters of co-regulated genes. BMC Genomics. 2010, 11: 124-10.1186/1471-2164-11-124.
Article
PubMed Central
PubMed
Google Scholar
Xiang LX, He D, Dong WR, Zhang YW, Shao JZ: Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish. BMC Genomics. 2010, 11: 472-10.1186/1471-2164-11-472.
Article
PubMed Central
PubMed
Google Scholar
Wang XW, Luan JB, Li JM, Bao YY, Zhang CX, Liu SS: De novo characterization of a whitefly transcriptome and analysis of its gene expression during development. BMC Genomics. 2010, 11: 400-10.1186/1471-2164-11-400.
Article
PubMed Central
PubMed
Google Scholar
Audic S, Claverie JM: The significance of digital gene expression profiles. Genome Res. 1997, 7: 986-995.
CAS
PubMed
Google Scholar
Garg R, Patel RK, Tyagi AK, Jain M: De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. Dna Res. 2011, 18: 53-63. 10.1093/dnares/dsq028.
Article
PubMed Central
CAS
PubMed
Google Scholar
Oono Y, Kobayashi F, Kawahara Y, Yazawa T, Handa H, Itoh T, Matsumoto T: Characterisation of the wheat (triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat. BMC genomics. 2013, 14: 77-10.1186/1471-2164-14-77.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wang ZY, Fang BP, Chen JY, Zhang XJ, Luo ZX, Huang LF, Chen XL, Li YJ: De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas). BMC Genomics. 2010, 11: 726-10.1186/1471-2164-11-726.
Article
PubMed Central
CAS
PubMed
Google Scholar
Hao DC, Ge GB, Xiao PG, Zhang YY, Yang L: The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencing. PLoS One. 2011, 6: e21220-10.1371/journal.pone.0021220.
Article
PubMed Central
CAS
Google Scholar
Xia ZH, Xu HM, Zhai JL, Li DJ, Luo HL, He CZ, Huang X: RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis. Plant Mol Biol. 2011, 77: 299-308. 10.1007/s11103-011-9811-z.
Article
CAS
PubMed
Google Scholar
Hua WP, Zhang Y, Song J, Zhao LJ, Wang ZZ: De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients. Genomics. 2011, 98: 272-279. 10.1016/j.ygeno.2011.03.012.
Article
CAS
Google Scholar
Liu B, Jiang G, Zhang Y, Li J, Li X, Yue J, Chen F, Liu H, Li H, Zhu S: Analysis of transcriptome differences between resistant and susceptible strains of the citrus red mite Panonychus citri (Acari: Tetranychidae). PloS one. 2011, 6: e28516-10.1371/journal.pone.0028516.
Article
PubMed Central
CAS
PubMed
Google Scholar
Hyun TK, Rim Y, Jang H, Kim CH, Park J, Kumar R, Lee S, Kim BC, Bhak J, Nguyen-Quoc B: De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis. Plant Mol Biol. 2012, 79: 413-427. 10.1007/s11103-012-9919-9.
Article
CAS
PubMed
Google Scholar
Zhang JA, Liang S, Duan JL, Wang J, Chen SL, Cheng ZS, Zhang Q, Liang XQ, Li YR: De novo assembly and characterisation of the transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.). BMC Genomics. 2012, 13: 90-10.1186/1471-2164-13-90.
Article
PubMed Central
CAS
PubMed
Google Scholar
Yin YX, Zhang XW, Fang YJ, Pan LL, Sun GY, Xin CQ, Abdullah MMB, Yu XG, Hu SN, Al-Mssallem IS: High-throughput sequencing-based gene profiling on multi-staged fruit development of date palm (Phoenix dactylifera, L.). Plant Mol Biol. 2012, 78: 617-626. 10.1007/s11103-012-9890-5.
Article
PubMed Central
CAS
PubMed
Google Scholar
Hieke S, Menzel CM, Ludders P: Shoot development, chlorophyll, gas exchange and carbohydrates in lychee seedlings (Litchi chinensis). Tree Physiol. 2002, 22: 947-953. 10.1093/treephys/22.13.947.
Article
CAS
PubMed
Google Scholar
Dash M, Johnson LK, Malladi A: Severe shading reduces early fruit growth in apple by decreasing cell production and expansion. J Am Soc Hortic Sci. 2012, 137: 275-282.
CAS
Google Scholar
Cai ZQ: Shade delayed flowering and decreased photosynthesis, growth and yield of Sacha Inchi (Plukenetia volubilis) plants. Ind Crop Prod. 2011, 34: 1235-1237. 10.1016/j.indcrop.2011.03.021.
Article
Google Scholar
Cartechini A, Palliotti A: Effect of shading on vine morphology and productivity and leaf gas exchange characteristics in grapevines in the field. Am J Enol Viticult. 1995, 46: 227-234.
Google Scholar
Malladi A, Johnson LK: Expression profiling of cell cycle genes reveals key facilitators of cell production during carpel development, fruit set, and fruit growth in apple (Malus× domestica Borkh.). J Exp Bot. 2011, 62: 205-219. 10.1093/jxb/erq258.
Article
PubMed Central
CAS
PubMed
Google Scholar
Brouwer B, Ziolkowska A, Bagard M, Keech O, Gardeström P: The impact of light intensity on shade-induced leaf senescence. Plant Cell Environ. 2012, 35: 1084-1098. 10.1111/j.1365-3040.2011.02474.x.
Article
PubMed
Google Scholar
Rosenwasser S, Rot I, Sollner E, Meyer AJ, Smith Y, Leviatan N, Fluhr R, Friedman H: Organelles contribute differentially to reactive oxygen species-related events during extended darkness. Plant Physiol. 2011, 156: 185-201. 10.1104/pp.110.169797.
Article
PubMed Central
CAS
PubMed
Google Scholar
Pastori GM, Del Río LA: Natural senescence of pea leaves (an activated oxygen-mediated function for peroxisomes). Plant Physiol. 1997, 113: 411-418.
PubMed Central
CAS
PubMed
Google Scholar
Causin HF, Roberts IN, Criado MV, Gallego SM, Pena LB, Ríos MDC, Barneix AJ: Changes in hydrogen peroxide homeostasis and cytokinin levels contribute to the regulation of shade-induced senescence in wheat leaves. Plant Sci. 2009, 177: 698-704. 10.1016/j.plantsci.2009.08.014.
Article
CAS
Google Scholar
Hernández-Blanco C, Feng DX, Hu J, Sánchez-Vallet A, Deslandes L, Llorente F, Berrocal-Lobo M, Keller H, Barlet X, Sánchez-Rodríguez C: Impairment of cellulose synthases required for Arabidopsis secondary cell wall formation enhances disease resistance. The Plant Cell Online. 2007, 19: 890-903. 10.1105/tpc.106.048058.
Article
Google Scholar
Priyanka B, Sekhar K, Reddy VD, Rao KV: Expression of pigeonpea hybrid-proline-rich protein encoding gene (CcHyPRP) in yeast and Arabidopsis affords multiple abiotic stress tolerance. Plant Biotechnol J. 2010, 8: 76-87. 10.1111/j.1467-7652.2009.00467.x.
Article
CAS
PubMed
Google Scholar
Piršelová B, Matušíková I: Callose: the plant cell wall polysaccharide with multiple biological functions. Acta Physiol Plant. 2013, 35: 635-644. 10.1007/s11738-012-1103-y.
Article
Google Scholar
Robert-Seilaniantz A, Grant M, Jones JD: Hormone crosstalk in plant disease and defense: more than just jasmonate-salicylate antagonism. Annu Rev Phytopathol. 2011, 49: 317-343. 10.1146/annurev-phyto-073009-114447.
Article
CAS
PubMed
Google Scholar
Davies PJ: The plant hormones: their nature, occurrence, and functions. Plant Hormones: Biosynthesis, Signal Transduction, Action. Edited by: Davies PJ. 2010, New York: Springer, 3
Chapter
Google Scholar
Parlitz S, Kunze R, Mueller-Roeber B, Balazadeh S: Regulation of photosynthesis and transcription factor expression by leaf shading and re-illumination in Arabidopsis thaliana leaves. J Plant Physiol. 2011, 168: 1311-1319. 10.1016/j.jplph.2011.02.001.
Article
CAS
PubMed
Google Scholar
Bepete M, Lakso AN: Differential effects of shade on early-season fruit and shoot growth rates in ‘Empire’ apple. HortSci. 1998, 33: 823-825.
Google Scholar
Byers RE, Lyons CG, Yoder KS, Barden JA, Young RW: Peach and apple thinning by shading and photosynthetic inhibition. J Hortic Sci. 1985, 60: 465-472.
CAS
Google Scholar
Ferree DC, McArtney SJ, Scurlock DM: Influence of irradiance and period of exposure on fruit set of French-American hybrid grapes. J Am Soc Hortic Sci. 2001, 126: 283-290.
Google Scholar
Del Campillo E, Lewis LN: Occurrence of 9.5 cellulase and other hydrolases in flower reproductive organs undergoing major cell wall disruption. Plant Physiol. 1992, 99: 1015-1020. 10.1104/pp.99.3.1015.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ruiz R, Guardiola JL: Carbohydrate and mineral nutrition of orange fruitlets in relation to growth and abscission. Physiol Plant. 1994, 90: 27-36. 10.1111/j.1399-3054.1994.tb02188.x.
Article
CAS
Google Scholar
Kuang JF, Wu JY, Zhong HY, Li CQ, Chen JY, Lu WJ, Li JG: Carbohydrate stress affecting fruitlet abscission and expression of genes related to auxin signal transduction pathway in litchi. Int J Mol Sci. 2012, 13: 16084-16103. 10.3390/ijms131216084.
Article
PubMed Central
CAS
PubMed
Google Scholar
Gil-Amado JA, Gomez-Jimenez MC: Regulation of polyamine metabolism and biosynthetic gene expression during olive mature-fruit abscission. Planta. 2012, 235: 1221-1237. 10.1007/s00425-011-1570-1.
Article
CAS
PubMed
Google Scholar
Lashbrook CC, Cai S: Cell wall remodeling in Arabidopsis stamen abscission zones: temporal aspects of control inferred from transcriptional profiling. Plant Signal Behav. 2008, 3: 733-736. 10.4161/psb.3.9.6489.
Article
PubMed Central
PubMed
Google Scholar
Davies KM, Seelye JF, Irving DE, Borst WM, Hurst PL, King GA: Sugar regulation of harvest-related genes in asparagus. Plant Physiol. 1996, 111: 877-883. 10.1104/pp.111.3.877.
Article
PubMed Central
CAS
PubMed
Google Scholar
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K: Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005, 42: 567-585. 10.1111/j.1365-313X.2005.02399.x.
Article
CAS
PubMed
Google Scholar
Winichayakul S, Moyle RL, Coupe SA, Davies KM, Farnden KJF: Analysis of the asparagus (Asparagus officinalis) asparagine synthetase gene promoter identifies evolutionarily conserved cis-regulatory elements that mediate Suc-repression. Func Plant Biol. 2004, 31: 63-72. 10.1071/FP03179.
Article
CAS
Google Scholar
Fatland BL, Ke J, Anderson MD, Mentzen WI, Cui LW, Allred CC, Johnston JL, Nikolau BJ, Wurtele ES: Molecular characterization of a heteromeric ATP-citrate lyase that generates cytosolic acetyl-coenzyme A in Arabidopsis. Plant Physiol. 2002, 130: 740-756. 10.1104/pp.008110.
Article
PubMed Central
PubMed
Google Scholar
Zhang XD, Jenkins JN, Callahan FE, Creech RG, Si Y, McCarty JC, Saha S, Ma DP: Molecular cloning, differential expression, and functional characterization of a family of class I ubiquitin-conjugating enzyme (E2) genes in cotton (Gossypium). Biochim Biophys Acta. 2003, 1625: 269-279. 10.1016/S0167-4781(02)00623-1.
Article
CAS
PubMed
Google Scholar
Hudson AO, Singh BK, Leustek T, Gilvarg C: An LL-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants. Plant Physiol. 2006, 140: 292-301.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wu JY, Peng G, Li CQ, Lu WJ, Wang ZH, Li JG: A new rapid and effective method for RNA isolation from litchi tissues of fruitlet and abscission zone. Acta Hortic Sin. 2011, 38: 1191-1196.
CAS
Google Scholar
Li RQ, Zhu HM, Ruan J, Qian WB, Fang XD, Shi ZB, Li YR, Li ST, Shan G, Kristiansen K: De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 2010, 20: 265-272. 10.1101/gr.097261.109.
Article
PubMed Central
CAS
PubMed
Google Scholar
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M: Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 2005, 21: 3674-3676. 10.1093/bioinformatics/bti610.
Article
CAS
PubMed
Google Scholar
Ye J, Fang L, Zheng HK, Zhang Y, Chen J, Zhang ZJ, Wang J, Li ST, Li RQ, Bolund L: WEGO: a web tool for plotting GO annotations. Nucleic Acids Res. 2006, 34: W293-W297. 10.1093/nar/gkl031.
Article
PubMed Central
CAS
PubMed
Google Scholar
Morrissy AS, Morin RD, Delaney A, Zeng T, McDonald H, Jones S, Zhao Y, Hirst M, Marra MA: Next-generation tag sequencing for cancer gene expression profiling. Genome Res. 2009, 19: 1825-1835. 10.1101/gr.094482.109.
Article
PubMed Central
CAS
PubMed
Google Scholar
‘t Hoen PAC, Ariyurek Y, Thygesen HH, Vreugdenhil E, Vossen RH, de Menezes RX, Boer JM, van Ommen GB, den Dunnen JT: Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res. 2008, 36: e141-10.1093/nar/gkn705.
Article
PubMed Central
PubMed
Google Scholar
Benjamini Y, Yekutieli D: The control of the false discovery rate in multiple testing under dependency. Ann Stat. 2001, 29: 1165-1188. 10.1214/aos/1013699998.
Article
Google Scholar
Eisen MB, Spellman PT, Brown PO, Botstein D: Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci. 1998, 95: 14863-14868. 10.1073/pnas.95.25.14863.
Article
PubMed Central
CAS
PubMed
Google Scholar
Saldanha AJ: Java Treeview-extensible visualization of microarray data. Bioinformatics. 2004, 20: 3246-3248. 10.1093/bioinformatics/bth349.
Article
CAS
PubMed
Google Scholar
Zhong HY, Chen JW, Li CQ, Chen L, Wu JY, Chen JY, Lu WJ, Li JG: Selection of reliable reference genes for expression studies by reverse transcription quantitative real-time PCR in litchi under different experimental conditions. Plant Cell Rep. 2011, 30: 641-653. 10.1007/s00299-010-0992-8.
Article
CAS
PubMed
Google Scholar