Warren EJ, Peter AD, Janice SM, Stephen JO: Resolution of recent radiations within three evolutionary lineages of felidae using mitochondrial restriction fragment length polymorphism variation. J Mamm Evol. 1996, 3 (2): 97-120. 10.1007/BF01454358.
Article
Google Scholar
Seung-Jin S, Tiffani LW: Big cat phylogenies, consensus trees, and computational thinking. J Comput Biol. 2011, 18 (7): 895-906. 10.1089/cmb.2010.0199.
Article
Google Scholar
Burger J, Rosendahl W, Loreille O, Hemmer H, Eriksson T, Götherström A, Hiller J, Collins MJ, Wess T, Alt KW: Molecular phylogeny of the extinct cave lion Panthera leo persica spelaea. Mol Phylogenet Evol. 2004, 30 (3): 841-849. 10.1016/j.ympev.2003.07.020.
Article
CAS
PubMed
Google Scholar
Singh HS, Gibson L: A conservation success story in the otherwise dire megafauna extinction crisis: the Asiatic lion (Panthera leo persica) of Gir forest. Biol Conserv. 2011, 144 (5): 1753-1757. 10.1016/j.biocon.2011.02.009.
Article
Google Scholar
Stephen JO, Janice SM, Craig P, Lawrence H, Valerius D, Paul J, Janis O, David EW, Mitchell B: Biochemical genetic variation in geographic isolates of African and Asiatic lions. Natl Geogr Res. 1987, 3 (1): 114-124.
Google Scholar
Singh A, Shailaja A, Singh A, Shailaja A, Gaur L, Singh V: Development and characterization of novel microsatellite markers in the Asiatic lion (Panthera leo persica). Mol Ecol Resour. 2002, 2 (4): 542-554.
CAS
Google Scholar
Dianne NJ, William SM, Stephens JC, O’Brien SJ: Molecular phylogeny of mitochondrial cytochrome b and 12S rRNA sequences in the Felidae. Mol Phylogenet Evol. 1995, 12 (4): 690-707.
Google Scholar
Michelle YM, Deborah AM: Phylogeny and speciation of felids. Cladistics. 2000, 16 (2): 232-253. 10.1111/j.1096-0031.2000.tb00354.x.
Article
Google Scholar
Jae-Heup K, Eizirik E, O'Brien SJ, Johnson WE: Structure and patterns of sequence variation in the mitochondrial DNA control region of the great cats. Mitochondr DNA. 2001, 1 (3): 279-292. 10.1016/S1567-7249(01)00027-7.
Article
CAS
Google Scholar
Zhang W, Zhang Z, Shen F, Hou R, Lv X, Yue B: Highly conserved D-loop-like nuclear mitochondrial sequences (Numts) in tiger (Panthera tigris). J Genet. 2006, 85 (2): 107-116. 10.1007/BF02729016.
Article
CAS
PubMed
Google Scholar
Boore JL, Macey JR, Medina M: Sequencing and comparing whole mitochondrial genomes of animals. Methods Enzymol. 2005, 395: 311-348.
Article
CAS
PubMed
Google Scholar
Hebert PD, Cywinska A, Ball SL, deWaard JR: Biological identifications through DNA barcodes. Proc Biol Sci. 2003, 270 (1512): 313-322. 10.1098/rspb.2002.2218.
Article
PubMed Central
CAS
PubMed
Google Scholar
Davis BW, Li G, Murphy WJ: Supermatrix and species tree methods resolve phylogenetic relationships within the big cats, panthera (carnivora: Felidae). Mol Phylogenet Evol. 2010, 56 (1): 64-76. 10.1016/j.ympev.2010.01.036.
Article
CAS
PubMed
Google Scholar
MITOS. [http://mitos.bioinf.uni-leipzig.de]
Kim KS, Seong EL, Ho WJ, Ji HH: The complete nucleotide sequence of the domestic dog (Canis familiariz) mitochondrial genome. Mol Phylogenet Evol. 1998, 10 (2): 210-220. 10.1006/mpev.1998.0513.
Article
CAS
PubMed
Google Scholar
Ursing BM, Arnason U: The complete mitochondrial DNA sequence of the pig (Sus scrofa). J Mol Evol. 1998, 47 (3): 302-306. 10.1007/PL00006388.
Article
CAS
PubMed
Google Scholar
Gissi C, Gullberg A, Arnason U: The complete mitochondrial DNA sequence of the rabbit (Oryctolagus cuniculus). Genomics. 1998, 50 (2): 161-169. 10.1006/geno.1998.5282.
Article
CAS
PubMed
Google Scholar
Sumida M, Kanamori Y, Kaneda H, Kato Y, Nishioka M, Hasegawa M, Yonekawa H: Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata. Genes Genet Syst. 2001, 76 (5): 311-325. 10.1266/ggs.76.311.
Article
CAS
PubMed
Google Scholar
Wu XB, Wang YQ, Zhou KY, Zhu WQ, Nie JS, Wang CL: Complete mitochondrial DNA sequence of Chinese alligator, Alligator sinensis, and phylogeny of crocodiles. Chin Sci Bull. 2003, 48 (19): 2050-2054. 10.1360/03wc0076.
Article
CAS
Google Scholar
Douglas DA, Gower DJ: Snake mitochondrial genomes: phylogenetic relationships and implications of extended taxon sampling for interpretations of mitogenomic evolution. BMC Genomics. 2010, 11: 14-10.1186/1471-2164-11-14.
Article
PubMed Central
PubMed
Google Scholar
Sun Y, Ma F, Xiao B, Zheng JJ, Yuan XD, Tang MQ, Wang L, Yu YF, Li QW: The complete mitochondrial genomes sequences of Asio flammeus and Asio otus and comparativeanalysis. Sci China Ser C Life Sci. 2004, 47 (6): 510-520. 10.1360/04yc0117.
Article
CAS
Google Scholar
Hu M, Chilton NB, Gasser RB: The mitochondrial genome of Strongyloides stercoralis (Nematoda)—idiosyncratic gene order and evolutionary implications. Int J Parasitol. 2003, 33 (12): 1393-1408. 10.1016/S0020-7519(03)00130-9.
Article
CAS
PubMed
Google Scholar
Man Z, Yishu W, Peng Y, Xiaobing W: Crocodilian phylogeny inferred from twelve mitochondrial protein-coding genes, with new complete mitochondrial genomic sequences for Crocodylus acutus and Crocodylus novaeguineae. Mol Phylogenet Evol. 2011, 60 (2011): 62-67.
Article
PubMed
Google Scholar
Wei L, Xiaobing E, Jiang Z: The complete mitochondrial genome structure of snow leopard Panthera uncia. Mol Biol Rep. 2009, 36 (3): 871-878.
Article
CAS
PubMed
Google Scholar
Wu X, Yan P, Hu L, Su X, Jiang Z: Complete nucleotide sequences and gene organization of mitochondrial genome of Bufo gargarizans. Mitochondrion. 2006, 6 (4): 186-193. 10.1016/j.mito.2006.07.003.
Article
PubMed
Google Scholar
Jae-Heup K, Eizirik E, O'Brien SJ, Johnson WE: Structure and patterns of sequence variation in the mitochondrial DNA control region of the great cats. Mitochondrion. 2001, 1 (3): 279-292. 10.1016/S1567-7249(01)00027-7.
Article
CAS
PubMed
Google Scholar
Lei WEI, XiaoBing WU, LiXin ZHU, ZhiGang JIANG: Mitogenomic analysis of the genus Panthera. Sci China Life Sci. 2011, 54 (10): 917-930. 10.1007/s11427-011-4219-1.
Article
Google Scholar
O'Brien SJ, Johnson WE: The evolution of cats. Genomic paw prints in the DNA of the world's wild cats have clarified the cat family tree and uncovered several remarkable migrations in their past. Sci Am. 2007, 297 (1): 68-75.
Article
PubMed
Google Scholar
Johnson WE, Eizirik E, Pecon-Slattery J, Murphy WJ, Antunes A, Teeling E, O'Brien SJ: The late miocene radiation of modern felidae: a genetic assessment. Science. 2006, 311 (5757): 73-77. 10.1126/science.1122277.
Article
CAS
PubMed
Google Scholar
Janczewski DN, Modi WS, Stephens JC: Molecular evolution of mitochondrial 12S RNA and cytochrome b sequences in the Pantherine lineage of Felidae. Mol Biol Evol. 1995, 12 (4): 690-707.
CAS
PubMed
Google Scholar
Frazer-Abel AA, Hagerman PJ: Determination of the angle between the acceptor and anticodon stems of a truncated mitochondrial tRNA. Mol Biol. 1999, 85 (2): 581-593.
Article
Google Scholar
CLC Genomics Workbench v 5.0.http://www.clcbio.com/products/clc-genomics-workbench/,
Benson G: Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999, 27 (2): 573-580. 10.1093/nar/27.2.573.
Article
PubMed Central
CAS
PubMed
Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S: MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011, 28 (10): 2731-2739. 10.1093/molbev/msr121.
Article
PubMed Central
CAS
PubMed
Google Scholar
Drummond AJ, Rambaut A: BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 2007, 7: 214-10.1186/1471-2148-7-214.
Article
PubMed Central
PubMed
Google Scholar
Anne CS, Fabia UB, Laura SK, George HP, Evan T, Hsiuman L, Sudhir K: More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure. Philos Trans R Soc Lond B Biol Sci. 2010, 365 (1556): 3277-3288. 10.1098/rstb.2010.0096.
Article
Google Scholar
FigTree v1.3.http://tree.bio.ed.ac.uk/software/figtree/,