| Normal feces | Patient feces | Patient bile | Patient stone | Totally |
---|---|---|---|---|---|
(N = 38) | (N = 29) | (N = 26 ) | (N = 27) | (N = 120) | |
Total sequences | 77061 | 64360 | 81661 | 76135 | 299, 217 |
Sequences per sample | 2028 ± 186 | 2219 ± 175 | 3141 ± 310 | 2820 ± 313 | 2493 ± 127 |
Total OTUs | 1, 497 | 1, 772 | 3, 696 | 3, 456 | 4, 637 |
OTU number per sample*** | 178 ± 13 | 167 ± 26 | 593 ± 73 | 470 ± 73 | 321 ± 29 |
Singletons*** | 81 ± 5 | 78 ± 15 | 240 ± 44 | 241 ± 39 | 166 ± 16 |
Good coverage (%) | 95.1 ± 0.4 | 96.1 ± 0.5 | 89.1 ± 1.6 | 89.7 ± 1.7 | 92.8 ± 0.6 |
Shannon diversity index*** | 4.97 ± 0.15 | 4.59 ± 0.21 | 6.84 ± 0.46 | 6.25 ± 0.44 | 5.57 ± 0.18 |
Chao1a,*** | 299.8 ± 20.3 | 296.9 ± 51.3 | 1075.9 ± 147.1 | 847.3 ± 131.1 | 590.4 ± 54.5 |
PD - whole treea,*** | 10.4 ± 0.7 | 11.4 ± 1.4 | 33.1 ± 3.0 | 28.3 ± 3.1 | 19.6 ± 1.4 |