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Table 3 Differential expression of genes related to proteolysis

From: Inflammatory responses in primary muscle cell cultures in Atlantic salmon (Salmo salar)

Gene ID1 Annotation2 Mean fold change± SE3 Identity4
Ssa#CL13Contig1 CL13Contig1 10.0 ± 1.8 Collagenase 3
Ssa#S30266930 DW553898 8.3 ± 0.4 Angiotensinogen
Ssa#CK884742 CK884742 3.4 ± 0.5 Cytosolic non-specific dipeptidase
Ssa#S35528810 EG815188 3.2 ± 0.1 Ubiquitin-like protein 1
Ssa#S18890005 CB515535 2.8 ± 0.2 E3 ubiquitin-protein ligase RNF144A-A
Ssa#DW564916 DW564916 2.7 ± 0.4 Ubr5 protein
Ssa#CL300Ctg1 CL300Contig1 2.4 ± 0.1 Proteasome subunit beta type-6 precursor
Ssa#KSS4965 KSS4965 2.3 ± 0.1 Proteasome subunit beta type 7b
Ssa#STIR04015 BT048053 2.2 ± 0.1 Proteasomebeta type 8
Ssa#S30295323 DW582287 2.2 ± 0.1 Proteasome subunit alpha type-6
Ssa#S35509463 EG795841 2.0 ± 0.0 E3 ubiquitin-protein ligase CHFR
Ssa#S35533557 EG819935 −2.1 ± 0.1 Ubiquitin-conjugating enzyme E2 T
Ssa#S35507555 EG793933 −2.1 ± 0.2 Calpain small subunit 1
Ssa#S35530808 EG817186 −2.1 ± 0.1 Cystatin-B
Ssa#S31992074 DY720671 −3.8 ± 0.2 Ubiquitin- containing phd and ring finger 1
Ssa#S30242447 NM_001141717 −3.9 ± 0.2 Serine protease htra1
Ssa#S35564994 EG851372 −16.2 ± 0.9 Protease, serine, 35
  1. List of selected mRNAs related to proteolysis found to be increased or decreased in expression in response to rIL-1β stimulation. Genes were assigned to the table based upon both their GO identifier and previous knowledge of their functions. Genes with greatest fold differences in expression are presented, the genes that are lower in expression are denoted by (-) value. The genes shown were significant at p < 0.05 following t- tests with Benjamini-Hochberg FDR and greater than 2-fold change. 1Indicates the unique code for the feature on the microarray, 2 Accession number of the cDNA sequence, accession numbers beginning with TC are for oligos from the TIGR Atlantic Salmon Gene Index. 3Fold change, in the case of oligos that featured multiple times in the gene list the one with the highest fold change is reported. 4Identity of the probe target as determined by BLASTX and BLASTN searches.