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Table 6 Differential expression of genes related to lipid and sterol metabolism

From: Inflammatory responses in primary muscle cell cultures in Atlantic salmon (Salmo salar)

Gene ID1 Annotation2 Mean fold change± SE3 Identity4
Ssa#S18890165 CB515874 23.2 ± 2.2 Creatine kinase, ubiquitous mitochondrial precursor
Ssa#STIR00012_4 AY848944 13.3 ± 1.1 Prostaglandin-endoperoxide synthase 2
Ssa#S30259776 DW546744 8.7 ± 0.3 Sphingomyelin synthase 1
Ssa#STIR22551 TC84899 6.3 ± 0.2 Lipoprotein lipase
Ssa#TC105353 TC105353 5.5 ± 1.0 Mecr protein
Ssa#STIR12701 TC70393 3.6 ± 0.1 Retinol dehydrogenase 3
Ssa#STIR31819 TC98944 3.5 ± 0.3 Glucose-6-phosphate-1-dehydrogenase
Ssa#S48420588 NM_001173773 3.2 ± 0.7 Myotubularin
Ssa#S31962884 DY691674 2.9 ± 0.1 Cytochrome c oxidase subunit 5B, mitochondrial
Ssa#S31963491 DY692281 2.8 ± 0.1 PPAR-alpha interacting complex protein 285 isoform 1
Ssa#KSS1976 KSS1976 2.8 ± 0.2 78 kDa glucose-regulated protein
Ssa#S35587721 EG874099 2.7 ± 0.2 Apolipoprotein-L3
Ssa#S30242761 DW538822 2.6 ± 0.2 Glycolipid transfer protein
Ssa#S32012431 DY741028 2.3 ± 0.1 StAR-related lipid transfer domain containing 3
Ssa#CL50Contig2 CL50Contig2 2.3 ± 0.1 Fructose-bisphosphate aldolase A
Ssa#S32007249 DY735846 2.1 ± 0.2 Adipose differentiation-related protein
Ssa#STIR13627 TC71700 −2.0 ± 0.2 Cox18 cytochrome c oxidase assembly homolog
Ssa#CA043659 CA043659 −2.1 ± 0.2 Apolipoprotein B precursor
Ssa#DW564686 DW564686 −2.1 ± 0.1 Mitochondrial uncoupling protein 2
Ssa#STIR21893 TC83911 −2.2 ± 0.1 Creatine kinase b-type
Ssa#S35679641 EG914359 −2.5 ± 0.1 Lipid phosphate phosphohydrolase 1
Ssa#STIR22405 TC84675 −2.6 ± 0.1 Lipase a
Ssa#S30285553 DW572521 −2.6 ± 0.1 Lipid phosphate phosphohydrolase 2
Ssa#S30246050 DW542111 −2.9 ± 0.3 Glyceraldehyde-3-phosphate dehydrogenase-2
Ssa#TC108704 TC108704 −3.8 ± 0.2 Lipocalin precursor
Ssa#STIR21285 TC82989 −4.9 ± 0.3 Glutamine synthetase
Ssa#S35523399 EG809777 −5.2 ± 0.5 Cholesteryl ester transfer protein, plasma
Ssa#STIR22650 TC85053 −5.2 ± 1.4 Apolipoprotein a-i binding protein
  1. List of selected mRNAs related to the lipid & sterol metabolism found to be increased or decreased in expression in response to rIL-1β stimulation. Genes were assigned to the table based upon both their GO identifier and previous knowledge of their functions. Genes with greatest fold differences in expression are presented, the genes that are lower in expression are denoted by (-) value. The genes shown were significant at p < 0.05 following t- tests with Benjamini-Hochberg FDR and greater than 2-fold change. 1Indicates the unique code for the feature on the microarray, 2Accession number of the cDNA sequence, accession numbers beginning with TC are for oligos from the TIGR Atlantic Salmon Gene Index. 3Fold change, in the case of oligos that featured multiple times in the gene list the one with the highest fold change is reported. 4Identity of the probe target as determined by BLASTX and BLASTN searches.