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Table 2 Pangenomes of the Nannochloropsis organelles

From: A pangenomic analysis of the Nannochloropsisorganellar genomes reveals novel genetic variations in key metabolic genes

Function

Chloroplast* (138 genes)

Mitochondria* (48 genes)

Photosynthesis

psaA psaB psaC psaD psaE psaF psaI psaJ psaL psaM psb30 psbA psbB psbC psbD psbE psbF psbH psbI psbJ psbK psbL psbN psbT psbV psb28 psbX psbY psbZ

 

Cytochromes, chlorophyll, cofactor biosynthesis

chlI chlL chlN chlB acsF ycf54 ccsA css1 petA petB petD petF petG petJ petL petM petN thiG thiS

 

Carbon metabolism

rbcL rbcS cbbX ilvB acpP

 

Energy metabolism

atpA atpB atpD atpE atpF atpG atpH atpI

atp1 apt6 apt8 atp9 cob cox1 (2) cox2 cox3 nad1 nad2 nad3 nad4 nad4L nad5 nad6 nad7 nad9 nad10

Translation

rpl1 rpl2 rpl3 rpl4 rpl5 rpl6 rpl11 rpl12 rpl13 rpl14 rpl16 rpl18 rpl19 rpl20 rpl21 rpl22 rpl23 rpl27 rpl29 rpl31 rpl32 rpl33 rpl34 rpl35 rpl36 rps2 rps3 rps4 rps5 rps6 rps7 rps8 rps9 rps10 rps11 rps12 rps13 rps14 rps16 rps17 rps18 rps19 rps20 tufA

rpl14 rpl16 rpl2 rpl5 rpl6 rps 2 rps3 rps4 rps7 rps8 rps10 rps11 rps12 rps13 rps14 rps19

Cellular processes

ftsH dnaK groEL secA secY tatC clpC1 clpC2 (2) clpN sufB/ycf24 sufC/ycf16

tatC

Transcription

rpoA rpoB rpoC1 rpoC2

NaocMp0002

Conserved unknowns

ycf3 ycf4 ycf34 ycp36 ycf44 ycf46 ycf49 ycf66

 

Novel hypotheticals/ORFans +

Nsk00013 Nsk00014 Nsk00050b Nsk00053 Nsk00085 Nsk00087 Naoc00026 Naoc00069

Nsk00219 Nsk00223 Nsk00232

  

Nsk00202 Nsk00203 Nsk00204 Nsk00206 NaocMp0016 Naon00225 NaonMp0027 NaonMp0040

  

NaonMp0027 NaonMp0016

  1. *Transcript was detected for all genes in bold.
  2. +Representative genes are shown; one or more orthologs are present on the Nannochloropsis replicons.
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BMC Genomics

ISSN: 1471-2164

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