Green BR: Chloroplast genomes of photosynthetic eukaryotes. Plant J. 2011, 66: 34-44. 10.1111/j.1365-313X.2011.04541.x.
Article
CAS
PubMed
Google Scholar
Andersen RA, Brett RW, Potter D, Sexton JP: Phylogeny of the Eustigmatophyceae based upon 18S rDNA, with emphasis on Nannochloropsis. Protist. 1998, 149: 61-74. 10.1016/S1434-4610(98)70010-0.
Article
CAS
PubMed
Google Scholar
Rodolfi L, Chini Zittelli G, Bassi N, Padovani G, Biondi N, Bonini G, Tredici MR: Microalgae for oil: strain selection, induction of lipid synthesis and outdoor mass cultivation in a low-cost photobioreactor. Biotechnol Bioeng. 2009, 102: 100-112. 10.1002/bit.22033.
Article
CAS
PubMed
Google Scholar
Chiu SY, Kao CY, Tsai MT, Ong SC, Chen CH, Lin CS: Lipid accumulation and CO2 utilization of Nannochloropsis oculata in response to CO2 aeration. Bioresour Technol. 2009, 100: 833-838. 10.1016/j.biortech.2008.06.061.
Article
CAS
PubMed
Google Scholar
Van Vooren G, Le Grand F, Legrand J, Cuine S, Peltier G, Pruvost J: Investigation of fatty acids accumulation in Nannochloropsis oculata for biodiesel application. Bioresour Technol. 2012, 124: 421-432.
Article
CAS
PubMed
Google Scholar
Bucy H, Marchese AJ: Oxidative stability of algae derived methyl esters. J Eng Gas Turbines Power Trans. 2012, 134:
Google Scholar
Simionato D, Block MA, La Rocca N, Jouhet J, Marechal E, Finazzi G, Morosinotto T: Response of nannochloropsis gaditana to nitrogen starvation includes a De novo biosynthesis of triacylglycerols, a decrease of chloroplast galactolipids and a reorganization of the photosynthetic apparatus. Eukaryot Cell. 2013, 12 (5): 665-76. 10.1128/EC.00363-12.
Article
CAS
PubMed Central
PubMed
Google Scholar
Mohammady NG: Characterization of the fatty acid composition of Nannochloropsis salina as a determinant of biodiesel properties. J Biosci. 2011, 66: 328-332.
Google Scholar
Quinn JC, Yates T, Douglas N, Weyer K, Butler J, Bradley TH, Lammers PJ: Nannochloropsis production metrics in a scalable outdoor photobioreactor for commercial applications. Bioresour Technol. 2012, 117: 164-171.
Article
CAS
PubMed
Google Scholar
Wahidin S, Idris A, Shaleh SR: The influence of light intensity and photoperiod on the growth and lipid content of microalgae Nannochloropsis sp. Bioresour Technol. 2013, 129: 7-11.
Article
CAS
PubMed
Google Scholar
Hoffmann M, Marxen K, Schulz R, Vanselow KH: TFA and EPA productivities of Nannochloropsis salina influenced by temperature and nitrate stimuli in turbidostatic controlled experiments. Mar Drugs. 2010, 8: 2526-2545. 10.3390/md8092526.
Article
CAS
PubMed
Google Scholar
Wei L, Xin Y, Wang D, Jing X, Zhou Q, Su X, Jia J, Ning K, Chen F, Hu Q, Xu J: Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae. BMC Genomics. 2013, 14: 534-10.1186/1471-2164-14-534.
Article
CAS
PubMed Central
PubMed
Google Scholar
Radakovits R, Jinkerson RE, Fuerstenberg SI, Tae H, Settlage RE, Boore JL, Posewitz MC: Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana. Nat Commun. 2012, 3: 686-
Article
PubMed Central
PubMed
Google Scholar
Pan K, Qin JJ, Li S, Dai WK, Zhu BH, Jin YC, Yu WG, Yang GP, Li DF: Nuclear monoploidy and asexual propagation of Nannochloropsis oceanica (Eustigmatophyceae) as revealed by its genome sequence. J Psychol. 2011, 47: 1425-1432.
CAS
Google Scholar
Guillard RR, Ryther JH: Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt, and Detonula confervacea (cleve) Gran. Can J Microbiol. 1962, 8: 229-239. 10.1139/m62-029.
Article
CAS
PubMed
Google Scholar
Bennett S: Solexa Ltd. Pharmacogenomics. 2004, 5: 433-438. 10.1517/14622416.5.4.433.
Article
PubMed
Google Scholar
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, et al: Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005, 437: 376-380.
CAS
PubMed Central
PubMed
Google Scholar
Zerbino DR, Birney E: Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008, 18: 821-829. 10.1101/gr.074492.107.
Article
CAS
PubMed Central
PubMed
Google Scholar
Raymond CK, Subramanian S, Paddock M, Qiu RL, Deodato C, Palmieri A, Chang J, Radke T, Haugen E, Kas A, Waring D, Bovee D, Stacy R, Kaul R, Olson MV: Targeted, haplotype-resolved resequencing of long segments of the human genome. Genomics. 2005, 86: 759-766. 10.1016/j.ygeno.2005.08.013.
Article
CAS
PubMed
Google Scholar
Cattolico RA, Jacobs MA, Zhou Y, Chang J, Duplessis M, Lybrand T, McKay J, Ong HC, Sims E, Rocap G: Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains. BMC Genomics. 2008, 9: 211-10.1186/1471-2164-9-211.
Article
PubMed Central
PubMed
Google Scholar
Hayden HS, Lim R, Brittnacher MJ, Sims EH, Ramage ER, Fong C, Wu Z, Crist E, Chang J, Zhou Y, Radey M, Rohmer L, Haugen E, Gillett W, Wuthiekanun V, Peacock SJ, Kaul R, Miller SI, Manoil C, Jacobs MA: Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients. Genomics. 2008, 91: 530-537. 10.1016/j.ygeno.2008.02.005.
Article
CAS
PubMed Central
PubMed
Google Scholar
Gordon D, Desmarais C, Green P: Automated finishing with autofinish. Genome Res. 2001, 11: 614-625. 10.1101/gr.171401.
Article
CAS
PubMed Central
PubMed
Google Scholar
Hayden HS, Gillett W, Saenphimmachak C, Lim R, Zhou Y, Jacobs MA, Chang J, Rohmer L, D'Argenio DA, Palmieri A, Levy R, Haugen E, Wong GK, Brittnacher MJ, Burns JL, Miller SI, Olson MV, Kaul R: Evolution of Burkholderia pseudomallei in recurrent melioidosis. PLoS One. 2012, 7: e36507-10.1371/journal.pone.0036507.
Article
CAS
PubMed Central
PubMed
Google Scholar
Delcher AL, Bratke KA, Powers EC, Salzberg SL: Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics. 2007, 23: 673-679. 10.1093/bioinformatics/btm009.
Article
CAS
PubMed Central
PubMed
Google Scholar
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW: RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007, 35: 3100-3108. 10.1093/nar/gkm160.
Article
CAS
PubMed Central
PubMed
Google Scholar
Lowe TM, Eddy SR: tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997, 25: 955-964. 10.1093/nar/25.5.0955.
Article
CAS
PubMed Central
PubMed
Google Scholar
Laslett D, Canback B: ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 2004, 32: 11-16. 10.1093/nar/gkh152.
Article
CAS
PubMed Central
PubMed
Google Scholar
Regalia M, Rosenblad MA, Samuelsson T: Prediction of signal recognition particle RNA genes. Nucleic Acids Res. 2002, 30: 3368-3377. 10.1093/nar/gkf468.
Article
CAS
PubMed Central
PubMed
Google Scholar
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A: The Pfam protein families database. Nucleic Acids Res. 2010, 38: D211-D222. 10.1093/nar/gkp985.
Article
CAS
PubMed Central
PubMed
Google Scholar
Benson G: Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999, 27: 573-580. 10.1093/nar/27.2.573.
Article
CAS
PubMed Central
PubMed
Google Scholar
Rice P, Longden I, Bleasby A: EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000, 16: 276-277. 10.1016/S0168-9525(00)02024-2.
Article
CAS
PubMed
Google Scholar
Lohse M, Drechsel O, Bock R: OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr Genet. 2007, 52: 267-274. 10.1007/s00294-007-0161-y.
Article
CAS
PubMed
Google Scholar
Le Corguille G, Pearson G, Valente M, Viegas C, Gschloessl B, Corre E, Bailly X, Peters AF, Jubin C, Vacherie B, Cock JM, Leblanc C: Plastid genomes of two brown algae. Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids. BMC Evol Biol. 2009, 9: 253-10.1186/1471-2148-9-253.
Article
PubMed Central
PubMed
Google Scholar
Ong HC, Wilhelm SW, Gobler CJ, Bullerjahn G, Jacobs MA, McKay J, Sims EH, Gillett WG, Zhou Y, Haugen E, Rocap G, Cattolico RA: Analyses of the complete chloroplast genome sequences of two members of the Pelagophyceae: Aureococcus anophagefferens Ccmp 1984 and Aureoumbra lagunensis Ccmp1507. J Phycol. 2010, 46: 602-615. 10.1111/j.1529-8817.2010.00841.x.
Article
CAS
Google Scholar
Oudot-Le Secq MP, Grimwood J, Shapiro H, Armbrust EV, Bowler C, Green BR: Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol Genet Genomics. 2007, 277: 427-439. 10.1007/s00438-006-0199-4.
Article
CAS
PubMed
Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S: MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011, 28: 2731-2739. 10.1093/molbev/msr121.
Article
CAS
PubMed Central
PubMed
Google Scholar
Zhang Y: I-TASSER server for protein 3D structure prediction. BMC Bioinforma. 2008, 9: 40-10.1186/1471-2105-9-40.
Article
Google Scholar
Bradley P, Misura KM, Baker D: Toward high-resolution de novo structure prediction for small proteins. Science. 2005, 309: 1868-1871. 10.1126/science.1113801.
Article
CAS
PubMed
Google Scholar
Raman S, Vernon R, Thompson J, Tyka M, Sadreyev R, Pei J, Kim D, Kellogg E, DiMaio F, Lange O, Kinch L, Sheffler W, Kim BH, Das R, Grishin NV, Baker D: Structure prediction for CASP8 with all-atom refinement using Rosetta. Proteins. 2009, 77 (Suppl 9): 89-99.
Article
CAS
PubMed Central
PubMed
Google Scholar
Kim DE, Chivian D, Baker D: Protein structure prediction and analysis using the Robetta server. Nucleic Acids Res. 2004, 32: W526-W531. 10.1093/nar/gkh468.
Article
CAS
PubMed Central
PubMed
Google Scholar
Jones DT: Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol. 1999, 292: 195-202. 10.1006/jmbi.1999.3091.
Article
CAS
PubMed
Google Scholar
Wilkens S, Dunn SD, Chandler J, Dahlquist FW, Capaldi RA: Solution structure of the N-terminal domain of the delta subunit of the E. coli ATP synthase. Nat Struct Biol. 1997, 4: 198-201. 10.1038/nsb0397-198.
Article
CAS
PubMed
Google Scholar
Carbajo RJ, Kellas FA, Runswick MJ, Montgomery MG, Walker JE, Neuhaus D: Structure of the F1-binding domain of the stator of bovine F1Fo-ATPase and how it binds an alpha-subunit. J Mol Biol. 2005, 351: 824-838. 10.1016/j.jmb.2005.06.012.
Article
CAS
PubMed
Google Scholar
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG: Clustal W and Clustal X version 2.0. Bioinformatics. 2007, 23: 2947-2948. 10.1093/bioinformatics/btm404.
Article
CAS
PubMed
Google Scholar
Buchan DW, Ward SM, Lobley AE, Nugent TC, Bryson K, Jones DT: Protein annotation and modelling servers at University College London. Nucleic Acids Res. 2010, 38: W563-W568. 10.1093/nar/gkq427.
Article
CAS
PubMed Central
PubMed
Google Scholar
Pollastri G, McLysaght A: Porter: a new, accurate server for protein secondary structure prediction. Bioinformatics. 2005, 21: 1719-1720. 10.1093/bioinformatics/bti203.
Article
CAS
PubMed
Google Scholar
Soding J, Biegert A, Lupas AN: The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 2005, 33: W244-W248. 10.1093/nar/gki408.
Article
PubMed Central
PubMed
Google Scholar
Chaudhury S, Berrondo M, Weitzner BD, Muthu P, Bergman H, Gray JJ: Benchmarking and analysis of protein docking performance in Rosetta v3.2. PLoS One. 2011, 6: e22477-10.1371/journal.pone.0022477.
Article
CAS
PubMed Central
PubMed
Google Scholar
Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D: Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J Mol Biol. 2003, 331: 281-299. 10.1016/S0022-2836(03)00670-3.
Article
CAS
PubMed
Google Scholar
Racine J: gnuplot 4.0: A portable interactive plotting utility. J Appl Econ. 2006, 21: 133-141. 10.1002/jae.885.
Article
Google Scholar
Rohl CA, Strauss CEM, Misura KMS, Baker D: Protein structure prediction using rosetta. Num Comput Methods. 2004, 383: 66-+-
Article
CAS
Google Scholar
Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J: ACT: the artemis comparison tool. Bioinformatics. 2005, 21: 3422-3423. 10.1093/bioinformatics/bti553.
Article
CAS
PubMed
Google Scholar
Thorvaldsdottir H, Robinson JT, Mesirov JP: Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform. 2012
Google Scholar
Lambowitz AM, Zimmerly S: Group II introns: mobile ribozymes that invade DNA. Cold Spring Harb Perspect Biol. 2011, 3: a003616-
Article
PubMed Central
PubMed
Google Scholar
Oudot-Le Secq MP, Fontaine JM, Rousvoal S, Kloareg B, Loiseaux-De Goer S: The complete sequence of a brown algal mitochondrial genome, the ectocarpale Pylaiella littoralis (L.) Kjellm. J Mol Evol. 2001, 53 (2): 80-88. 10.1007/s002390010196.
Article
CAS
PubMed
Google Scholar
Ikuta K, Kawai H, Muller DG, Ohama T: Recurrent invasion of mitochondrial group II introns in specimens of Pylaiella littoralis (brown alga), collected worldwide. Curr Genet. 2008, 53: 207-216. 10.1007/s00294-008-0178-x.
Article
CAS
PubMed
Google Scholar
Ravin NV, Galachyants YP, Mardanov AV, Beletsky AV, Petrova DP, Sherbakova TA, Zakharova YR, Likhoshway YV, Skryabin KG, Grachev MA: Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes. Curr Genet. 2010, 56: 215-223. 10.1007/s00294-010-0293-3.
Article
CAS
PubMed
Google Scholar
Wang RJ, Cheng CL, Chang CC, Wu CL, Su TM, Chaw SM: Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots. BMC Evol Biol. 2008, 8:
Google Scholar
Wicke S, Schneeweiss GM, dePamphilis CW, Muller KF, Quandt D: The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. Plant Mol Biol. 2011, 76: 273-297. 10.1007/s11103-011-9762-4.
Article
CAS
PubMed Central
PubMed
Google Scholar
Bourne CM, Palmer JD, Stoermer EF: Organization of the chloroplast genome of the fresh-water centric diatom Cyclotella meneghiniana. J Psychol. 1992, 28: 347-355.
CAS
Google Scholar
Udy DB, Belcher S, Williams-Carrier R, Gualberto JM, Barkan A: Effects of reduced chloroplast gene copy number on chloroplast gene expression in Maize. Plant Physiol. 2012, 160: 1420-1431. 10.1104/pp.112.204198.
Article
CAS
PubMed Central
PubMed
Google Scholar
Hollingshead S, Kopecna J, Jackson PJ, Canniffe DP, Davison PA, Dickman MJ, Sobotka R, Hunter CN: Conserved chloroplast open-reading frame ycf54 is required for activity of the magnesium protoporphyrin monomethylester oxidative cyclase in Synechocystis PCC 6803. J Biol Chem. 2012, 287: 27823-27833. 10.1074/jbc.M112.352526.
Article
CAS
PubMed Central
PubMed
Google Scholar
Oudot MP, Kloareg B, Loiseaux-de Goer S: The mitochondrial Pylaiella littoralis nad11 gene contains only the N-terminal FeS-binding domain. Gene. 1999, 235: 131-137. 10.1016/S0378-1119(99)00194-8.
Article
CAS
PubMed
Google Scholar
Vanselow C, Weber AP, Krause K, Fromme P: Genetic analysis of the Photosystem I subunits from the red alga, Galdieria sulphuraria. Biochim Biophys Acta. 2009, 1787: 46-59. 10.1016/j.bbabio.2008.10.004.
Article
CAS
PubMed
Google Scholar
Mueller-Cajar O, Stotz M, Wendler P, Hartl FU, Bracher A, Hayer-Hartl M: Structure and function of the AAA + protein CbbX, a red-type Rubisco activase. Nature. 2011, 479: 194-199. 10.1038/nature10568.
Article
CAS
PubMed
Google Scholar
Tchernov D, Livne A, Kaplan A, Sukenik A: The kinetic properties of ribulose-1,5-bisphosphate carboxylase/oxygenase may explain the high apparent photosynthetic affinity of Nannochloropsis sp to ambient inorganic carbon. Isr J Plant Sci. 2008, 56: 37-44. 10.1560/IJPS.56.1-2.37.
Article
CAS
Google Scholar
Rumpho ME, Worful JM, Lee J, Kannan K, Tyler MS, Bhattacharya D, Moustafa A, Manhart JR: Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica. Proc Natl Acad Sci USA. 2008, 105: 17867-17871. 10.1073/pnas.0804968105.
Article
CAS
PubMed Central
PubMed
Google Scholar
Stec B: Structural mechanism of RuBisCO activation by carbamylation of the active site lysine. Proc Natl Acad Sci USA. 2012, 109: 18785-18790. 10.1073/pnas.1210754109.
Article
CAS
PubMed Central
PubMed
Google Scholar
Moreno J, Garcia-Murria MJ, Marin-Navarro J: Redox modulation of Rubisco conformation and activity through its cysteine residues. J Exp Bot. 2008, 59: 1605-1614.
Article
CAS
PubMed
Google Scholar
Sakihama Y, Nakamura S, Yamasaki H: Nitric oxide production mediated by nitrate reductase in the green alga Chlamydomonas reinhardtii: an alternative NO production pathway in photosynthetic organisms. Plant Cell Physiol. 2002, 43: 290-297. 10.1093/pcp/pcf034.
Article
CAS
PubMed
Google Scholar
Barak Z, Chipman DM: Allosteric regulation in Acetohydroxyacid Synthases (AHASs)–different structures and kinetic behavior in isozymes in the same organisms. Arch Biochem Biophys. 2012, 519: 167-174. 10.1016/j.abb.2011.11.025.
Article
CAS
PubMed
Google Scholar
Belenky I, Steinmetz A, Vyazmensky M, Barak Z, Tittmann K, Chipman DM: Many of the functional differences between acetohydroxyacid synthase (AHAS) isozyme I and other AHASs are a result of the rapid formation and breakdown of the covalent acetolactate-thiamin diphosphate adduct in AHAS I. FEBS J. 2012, 279: 1967-1979. 10.1111/j.1742-4658.2012.08577.x.
Article
CAS
PubMed
Google Scholar
Lee YT, Duggleby RG: Regulatory interactions in Arabidopsis thaliana acetohydroxyacid synthase. FEBS Lett. 2002, 512: 180-184. 10.1016/S0014-5793(02)02253-6.
Article
CAS
PubMed
Google Scholar
Duggleby RG, McCourt JA, Guddat LW: Structure and mechanism of inhibition of plant acetohydroxyacid synthase. Plant Physiol Biochem. 2008, 46: 309-324. 10.1016/j.plaphy.2007.12.004.
Article
CAS
PubMed
Google Scholar
Boczar BA, Delaney TP, Cattolico RA: Gene for the ribulose-1,5-bisphosphate carboxylase small subunit protein of the marine chromophyte Olisthodiscus luteus is similar to that of a chemoautotrophic bacterium. Proc Natl Acad Sci USA. 1989, 86: 4996-4999. 10.1073/pnas.86.13.4996.
Article
CAS
PubMed Central
PubMed
Google Scholar
von Ballmoos C, Wiedenmann A, Dimroth P: Essentials for ATP synthesis by F1F0 ATP synthases. Annu Rev Biochem. 2009, 78: 649-672. 10.1146/annurev.biochem.78.081307.104803.
Article
CAS
PubMed
Google Scholar
von Ballmoos C, Cook GM, Dimroth P: Unique rotary ATP synthase and its biological diversity. Annu Rev Biophys. 2008, 37: 43-64. 10.1146/annurev.biophys.37.032807.130018.
Article
CAS
PubMed
Google Scholar
Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, Erickson E, Armenia Ferguson A, Handee W, Kong Q, Li X, Liu B, Lundback S, Peng C, Roston RL, Sanjaya , Simpson JP, Terbush A, Warakanont J, Zauner S, Farre EM: Genome, functional gene annotation, and nuclear transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. PLoS Genet. 2012, 8: e1003064-10.1371/journal.pgen.1003064.
Article
CAS
PubMed Central
PubMed
Google Scholar
Stoebe B, Kowallik KV: Gene-cluster analysis in chloroplast genomics. Trends Genet. 1999, 15: 344-347. 10.1016/S0168-9525(99)01815-6.
Article
CAS
PubMed
Google Scholar
Prescott M, Bush NC, Nagley P, Devenish RJ: Properties of yeast cells depleted of the OSCP subunit of mitochondrial ATP synthase by regulated expression of the ATP5 gene. Biochem Mol Biol Int. 1994, 34: 789-799.
CAS
PubMed
Google Scholar
Hazard AL, Senior AE: Defective energy coupling in delta-subunit mutants of Escherichia coli F1F0-ATP synthase. J Biol Chem. 1994, 269: 427-432.
CAS
PubMed
Google Scholar
Stack AE, Cain BD: Mutations in the delta subunit influence the assembly of F1F0 ATP synthase in Escherichia coli. J Bacteriol. 1994, 176: 540-542.
CAS
PubMed Central
PubMed
Google Scholar
Maiwald D, Dietzmann A, Jahns P, Pesaresi P, Joliot P, Joliot A, Levin JZ, Salamini F, Leister D: Knock-out of the genes coding for the Rieske protein and the ATP-synthase delta-subunit of Arabidopsis. Effects on photosynthesis, thylakoid protein composition, and nuclear chloroplast gene expression. Plant Physiol. 2003, 133: 191-202. 10.1104/pp.103.024190.
Article
CAS
PubMed Central
PubMed
Google Scholar
Rees DM, Leslie AG, Walker JE: The structure of the membrane extrinsic region of bovine ATP synthase. Proc Natl Acad Sci USA. 2009, 106: 21597-21601. 10.1073/pnas.0910365106.
Article
CAS
PubMed Central
PubMed
Google Scholar
Wilkens S, Borchardt D, Weber J, Senior AE: Structural characterization of the interaction of the delta and alpha subunits of the Escherichia coli F1F0-ATP synthase by NMR spectroscopy. Biochemistry. 2005, 44: 11786-11794. 10.1021/bi0510678.
Article
CAS
PubMed
Google Scholar
Wang F, Mei Z, Qi Y, Yan C, Hu Q, Wang J, Shi Y: Structure and mechanism of the hexameric MecA-ClpC molecular machine. Nature. 2011, 471: 331-335. 10.1038/nature09780.
Article
CAS
PubMed
Google Scholar
Zeth K, Ravelli RB, Paal K, Cusack S, Bukau B, Dougan DA: Structural analysis of the adaptor protein ClpS in complex with the N-terminal domain of ClpA. Nat Struct Biol. 2002, 9: 906-911. 10.1038/nsb869.
Article
CAS
PubMed
Google Scholar
Schuenemann VJ, Kralik SM, Albrecht R, Spall SK, Truscott KN, Dougan DA, Zeth K: Structural basis of N-end rule substrate recognition in Escherichia coli by the ClpAP adaptor protein ClpS. Embo Rep. 2009, 10: 508-514. 10.1038/embor.2009.62.
Article
CAS
PubMed Central
PubMed
Google Scholar
Kirstein J, Moliere N, Dougan DA, Turgay K: Adapting the machine: adaptor proteins for Hsp100/Clp and AAA + proteases. Nat Rev Microbiol. 2009, 7: 589-599. 10.1038/nrmicro2185.
Article
CAS
PubMed
Google Scholar
Tryggvesson A, Stahlberg FM, Mogk A, Zeth K, Clarke AK: Interaction specificity between the chaperone and proteolytic components of the cyanobacterial Clp protease. Biochem J. 2012, 446: 311-320. 10.1042/BJ20120649.
Article
CAS
PubMed
Google Scholar
Andersson FI, Blakytny R, Kirstein J, Turgay K, Bukau B, Mogk A, Clarke AK: Cyanobacterial ClpC/HSP100 protein displays intrinsic chaperone activity. J Biol Chem. 2006, 281: 5468-5475.
Article
CAS
PubMed
Google Scholar
Kress W, Maglica Z, Weber-Ban E: Clp chaperone-proteases: structure and function. Res Microbiol. 2009, 160: 618-628. 10.1016/j.resmic.2009.08.006.
Article
CAS
PubMed
Google Scholar
Wickner S, Gottesman S, Skowyra D, Hoskins J, McKenney K, Maurizi MR: A molecular chaperone, ClpA, functions like DnaK and DnaJ. Proc Natl Acad Sci USA. 1994, 91: 12218-12222. 10.1073/pnas.91.25.12218.
Article
CAS
PubMed Central
PubMed
Google Scholar
Weibezahn J, Schlieker C, Bukau B, Mogk A: Characterization of a trap mutant of the AAA + chaperone ClpB. J Biol Chem. 2003, 278: 32608-32617. 10.1074/jbc.M303653200.
Article
CAS
PubMed
Google Scholar