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Table 1 Differences between two clustering methods

From: RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)

  Original Paraclu RECLU
Threshold to discard clusters Number of tags in the cluster Tag per million (TPM) per base
Algorithm to calculate stabilities Ratio of the maximum d to the minimum d Sum of stabilities of accumulated clusters at the site
Evaluation of reproducibility NA IDR
Consensus cluster Extracting the largest cluster at each site Clusters at the top and bottom of the hierarchy