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Table 3 A comparison of gene expression ratios of domesticated and hybrid salmon with respect to wild individuals evaluated using RT-qPCR and microarray analysis

From: A comparison of gene transcription profiles of domesticated and wild Atlantic salmon (Salmo salar L.) at early life stages, reared under controlled conditions

 

Sac fry

Feeding fry

 

Domesticated

Hybrid

Domesticated

Hybrid

Target

RT-qPCR

MA

RT-qPCR

MA

RT-qPCR

MA

RT-qPCR

MA

MHCII

-1.48

-1.37

(-1.17)

(-1.10)

-1.95

-2.09

-1.24

-1.38

EPHX

1.27

2.24

1.20

1.57

1.23

2.08

1.20

1.55

IGF

-1.11

(1.39)

(1.01)

(1.56)

(1.08)

(-1.14)

(1.05)

(1.79)

Pesc

(1.02)

2.82

(1.03)

1.91

-1.15

2.43

-1.10

(1.36)

Poly10

-2.31

-6.72

-1.28

(-1.78)

-1.61

-3.19

-1.28

-1.63

  1. Microarray values are based on T-tests (unpaired unequal variance, p ≤ 0.01 and FC > =1.3), whereas RT-qPCR ratios were obtained by REST2009 (p ≤ 0.05). Non-significant values are shown in parenthesis. Ratios lower than 1 are expressed as -1/ratio to obtain an equivalent value to ratios above 1.
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BMC Genomics

ISSN: 1471-2164

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