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Table 12 Overlap study of ChIP-seq peaks.

From: Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees

File

IgG_r1

IgG_r2

RNA pol II_r1

RNA pol II_r2

ARK1_3738_r1

ARK1_3738_r2

ARK1_3940_r1

ARK1_3940_r2

IgG_r1

197

       

IgG_r2

12

493

      

Pt_RNA pol II_r1

9

2

13350

     

Pt_RNA pol II_r2

16

69

6944

8688

    

ARK1_3738_r1

118

39

3210

1610

12155

   

ARK1_3738_r2

104

87

4610

2512

11075

15683

  

ARK1_3940_r1

152

122

127

168

741

871

2049

 

ARK1_3940_r2

157

344

1111

896

3253

3611

1361

9076

  1. Numbers indicate the overlapping peaks between two ChIP-seq datasets.
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BMC Genomics

ISSN: 1471-2164

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