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Table 6 Overlap of peaks returned in different ratios of input control to RNA pol II ChIP-seq.

From: Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees

C/S ratio 0 :1 0.5 : 1 1 : 1 1.5 : 1
0 : 1 100 80.05 79.21 79.28
0.5 : 1 80.05 100 99.55 99.57
1 : 1 79.21 99.55 100 94.12
1.5 : 1 79.28 99.57 94.12 100
  1. Numbers in the table represent % of peaks in smaller set that overlap with at least one peak in larger set.