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Table 6 Overlap of peaks returned in different ratios of input control to RNA pol II ChIP-seq.

From: Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees

C/S ratio

0 :1

0.5 : 1

1 : 1

1.5 : 1

0 : 1

100

80.05

79.21

79.28

0.5 : 1

80.05

100

99.55

99.57

1 : 1

79.21

99.55

100

94.12

1.5 : 1

79.28

99.57

94.12

100

  1. Numbers in the table represent % of peaks in smaller set that overlap with at least one peak in larger set.
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BMC Genomics

ISSN: 1471-2164

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