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Table 1 The most abundantly represented ESTs in the S. moellendorffii cDNA library.

From: Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffii

  Cluster Number of ESTs Top BLASTX hit in non-redundant protein database
    Accession Number Best Identity Description E-value
1 SmoC-1_cn126 105 - Novel -
2 SmoC-1_cn125 46 - Novel -
3 SmoC-1_cn018 31 SP:P16031 Ribulose bisphosphate carboxylase small subunit) [Larix laricina] 8E-51
4 SmoC-1_cn121 25 SP:P04669 Ferredoxin, chloroplast precursor [Silene latifolia subsp. alba] 2E-26
5 SmoC-1_cn106 17 PIR:S16294 chlorophyll a/b-binding protein [Lycopersicon esculentum] 9E-99
6 SmoC-1_cn107 17 GB:AAM46780 latex plastidic aldolase-like protein [Hevea brasiliensis] 1E-164
7 SmoC-1_cn171 17 PIR:S31863 chlorophyll a/b-binding protein [Pinus sylvestris] 1E-106
8 SmoC-1_cn011 14 GB:AAC78107 photosystem-1 H subunit GOS5 [Oryza sativa] 8E-30
9 SmoC-1_cn233 13 SP:Q9SXW9 Plastocyanin, chloroplast precursor [Physcomitrella patens] 2E-37
10 SmoC-1_cn025 11 SP:P51118 glutamine synthetase cytosolic isoenzyme 1 [Vitis vinifera] 1E-152
11 SmoC-1_cn089 11 GB:AAG17036 S-adenosylmethionine synthetase [Pinus contorta] 7E-17
12 SmoC-1_cn195 11 SP:P11432 Early light-induced protein, chloroplast precursor (ELIP) [Pisum sativum] 1E-32
13 SmoC-1_cn023 9 SP:P82977 Subtilisin-chymotrypsin inhibitor [Triticum aestivum] 4E-11
14 SmoC-1_cn145 9 - Novel -
15 SmoC-1_cn179 9 SP:P30361 Cytochrome B6-F complex iron-sulfur subunit 1, chloroplast precursor [Nicotiana tabacum] 3E-74
16 SmoC-1_cn189 9 - Novel -
17 SmoC-1_cn006 8 GB:AAG59875 PSII subunit PsbW [Physcomitrella patens] 5E-13
18 SmoC-1_cn078 8 SP:O48560 Catalase 3 [Glycine max] 0
19 SmoC-1_cn211 8 SP:P23993 Photosystem I reaction center subunit XI, chloroplast precursor [Hordeum vulgare] 2E-55
20 SmoC-1_cn226 8 PDB:1EKJA Carbonic Anhydrase [Pisum Sativum] 2E-63
21 SmoC-1_cn019 7 REF:NP_175963 photosystem I reaction center subunit V, chloroplast, [Arabidopsis thaliana] 2E-34
22 SmoC-1_cn108 7 PIR:T23512 hypothetical protein K08H10.2a [Caenorhabditis elegans] 1E-12
23 SmoC-1_cn215 7 GB:AAB88617 ubiquitin conjugating enzyme [Zea mays] 3E-82
24 SmoC-1_cn218 7 SP:P27494 Chlorophyll a-b binding protein 36, chloroplast precursor [Nicotiana tabacum] 1E-127
25 SmoC-1_cn013 6 PIR:T06471 core protein [Pisum sativum] 1E-20
26 SmoC-1_cn016 6 SP:Q9SLQ8 Oxygen-evolving enhancer protein 2, chloroplast precursor [Cucumis sativus] 1E-79
27 SmoC-1_cn033 6 GB:AAM97011 expressed protein [Arabidopsis thaliana] 6E-40
28 SmoC-1_cn136 6 GB:AAO49652 photosystem I-N subunit [Phaseolus vulgaris] 2E-37
29 SmoC-1_cn139 6 DBJ:BAC66946 chloroplastic iron superoxide dismutase [Barbula unguiculata] 3E-69
30 SmoC-1_cn180 6 EMB:CAB71293 chloroplast ferredoxin-NADP+ oxidoreductase precursor [Capsicum annuum] 1E-139
31 SmoC-1_cn208 6 SP:P54773 Photosystem II 22 kDa protein, chloroplast precursor [Lycopersicon esculentum] 5E-61
32 SmoC-1_cn250 6 - Novel -
  1. Non-redundant protein database includes all non-redundant GenBank CDS translations (GB)+ RefSeq Proteins (REF) +PDB + SwissProt (SP) + PIR + PRF. The identities of ESTs were putatively described by the top BLASTX hit (with lowest E-value) of the assembled EST contigs.