Table 1 Species distribution of the ciliate dataset. Indicated are the total number of sequences per species and the number of clusters that were obtained after combining the sequences likely derived from a same gene. 377 clusters have a size varying between 2 and 21 sequences, the rest of the clusters are singletons.
Organism | Number of sequences | Number of clusters | number of clusters ≥2 sequences (size maximum of the cluster) | number of clusters singletons |
|---|---|---|---|---|
P. multivesiculatum | 715 | 502 | 115 (21) | 387 |
Epid. ecaudatum | 595 | 530 | 46 (5) | 484 |
Eud. maggii | 543 | 500 | 32 (4) | 468 |
I. prostoma | 546 | 442 | 43 (12) | 399 |
I. intestinalis | 84 | 81 | 2 (3) | 79 |
Das. ruminantium | 591 | 421 | 61 (20) | 360 |
Ent. caudatum | 1062 | 901 | 76 (18) | 825 |
Ent. simplex | 27 | 27 | 0 | 27 |
Dip. affine | 10 | 10 | 0 | 10 |
M. medium | 151 | 149 | 2 (2) | 147 |
TOTAL | 4324 | 3563 | 377 | 3186 |