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Table 1 The number of trGTPases identified on different E-value cutoffs

From: Phylogenetic distribution of translational GTPases in bacteria

  

Number of GTPases found

E-value

trGTP total

IF-2

EF-Tu

SelB

EF-G

TetR

RF-3

TypA

LepA

CysN/NodQ

Out-group

1.00E-200

1307

191

263

36

251

20

118

161

190

77

0

1.00E-100

1310

191

265

36

251

20

118

161

190

78

0

1.00E-10

1314

191

265

36

255

20

118

161

190

78

0

1

1314

191

265

36

255

20

118

161

190

78

0

10

1314

191

265

36

255

20

118

161

190

78

4

  1. The number of trGTPases identified on different E-value cutoffs (first column) by HMMSEARCH [18]. Total numbers of trGTPases are shown in the second column. Proteins that did not pass the first validation criteria (intactness of the GTPase domain and length) are not included. The following nine columns list the numbers of trGTPases in different subfamilies. The "out-group" column shows the number of sequences identified by profiles based on GTPases of other families.
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BMC Genomics

ISSN: 1471-2164

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