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Table 1 Statistics of indels between Nipponbare and 93-11 genomes in 35 Mb sequences.

From: Highly asymmetric rice genomes

Cultivar

Inserts

Asymmetric genes in inserts

 

Length

No.

Total length (bp)

Known

Unknown

TEa

Total

Nipponbare

1–3 kb

213

306,912

31

4

10

45

(34.7 Mb

3–5 kb

79

316,675

17

3

26

46

aligned)

5–10 kb

97

629,958

15

17

65

97

 

10–20 kb

58

752,324

23

12

80

115

 

> 20 kb

9

287,930

7

3

25

35

Sub-total

 

456

2,293,799

93

39

206

338

93-11

1–3 kb

232

410,336

23

13

11

47

(34.4 Mb

3–5 kb

73

283,721

26

12

9

47

aligned)

5–10 kb

84

581,674

35

17

15

67

 

10–20 kb

36

464,090

56

11

1

68

 

> 20 kb

2

42,205

0

4

2

6

Sub-total

 

427

1,782,026

140

57

38

235

Total

 

883

4,075,825

233

96

244

573

  1. Note. The bolded numbers are the same as the numbers in the bottom last column.
  2. a TE is transposable element related gene.
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BMC Genomics

ISSN: 1471-2164

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