Table 1 cDNA pre-smolt libraries used for contig assembly for the SGP dataset.
Library name | Number of sequences | ||
|---|---|---|---|
Pre-processed (failed) | Submitted to GenBank | Selected for clustering | |
Brain | 3991 (781) | 3847 | 3991 |
Brain II | 2263 (400) | 1882 | 2263 |
Eye | 5052 (1060) | 4870 | 5052 |
Gills | 3075 (762) | 2964 | 3075 |
Gills II | 1113 (164) | 1053 | 1113 |
Head kidney | 4358 (609) | 4210 | 4358 |
Heart | 1999 (288) | 1732 | 1999 |
Heart II | 1211 (405) | 1141 | 1211 |
Intestine | 2865 (708) | 2737 | 2865 |
Kidney | 1528 (1122) | 1433 | 1528 |
Liver | 2383 (292) | 2312 | 2383 |
Ovaries | 4142 (826) | 4113 | 4142 |
Red muscle | 661 (96) | 629 | 661 |
SSH Gills down-regulated | 446 (28) | 262 | 269 |
SSH Gills up-regulated | 415 (59) | 247 | 248 |
SSH Intestine down-regulated | 222 (65) | 218 | 222 |
SSH Intestine up-regulated | 252 (30) | 247 | 252 |
Skin | 1084 (64) | 1010 | 1084 |
Spleen | 4624 (517) | 4576 | 4624 |
Swimbladder | 2245 (419) | 2182 | 2245 |
Testes | 4910 (732) | 4854 | 4910 |
White muscle | 7316 (653) | 6656 | 6763 |
White muscle II | 1954 (294) | 1943 | 1954 |
Total | 58109 (10374) | 55118 | 57212 |