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Table 3 Summary of the predicted disorder rates in HIV proteins.

From: Protein intrinsic disorder toolbox for comparative analysis of viral proteins

Protein

Accession numbers

%VLXT(VL3)a

Methodsb

Virus Type

SU

2i60.pdb, Subunit G

11 (0)

X-Ray

HIV-1

(gp120)

    

TM

2cmr.pdb, Subunit: S

34 (27)

X-Ray

HIV-1

(gp41) TM

1jek.pdb, Subunit: A

64 (0)

X-Ray

Visna

MA (p17)

1hiw.pdb, Subunit: A

61 (48)

X-Ray

HIV-1

VPR

1ceu.pdb, Subunit: A

39 (63)

NMR

HIV-1

VPUc

2goh.pdb, Subunit: A

26 (NA)d

NMR

HIV-1

CA (p24)

1afv.pdb, Subunit:A

48 (0)

X-Ray

HIV-1

PR (p11)e

1tcw.pdb, Subunit A

18 (0)

X-Ray

SIV

RT (p66)e

2hnz.pdb, Sunbunt: A

18 (10)

X-Ray

HIV-1

IN (p32)e

1k6y.pdb, Subunit: A

26 (7)

X-Ray

HIV-1

Nefc

1avz.pdb, Subunit: A

26 (31)

X-Ray

HIV-1

Tatc

1jfw.pdb, Subunit: A

100 (100)

NMR

HIV-1

  1. aPercentage of residues in a chain that are predicted to be disordered.
  2. bMethods used to characterize the proteins
  3. cLocations of these proteins in virions have yet been determined. VPU is however, placed alongside with VPR for comparative purposes only.
  4. dChain available is too short for VL3 analysis.
  5. eExact locations of these proteins have yet been determined.